Date   

Re: Deserializer for "janusgraph:RelationIdentifier" not found

Florian Hockmann
 

But you are subscribed to the list and you are getting other messages here?

 

Am I not using JanusGraph.Net correctly?

 

Can you please show how you are creating the client and the GraphTraversalSource? If you are using the JanusGraphClientBuilder, then it should be using the JanusGraph.Net serializers.

 

Von: janusgraph-users@... <janusgraph-users@...> Im Auftrag von bill.poole via lists.lfaidata.foundation
Gesendet: Freitag, 26. August 2022 18:29
An: janusgraph-users@...
Betreff: [janusgraph-users] Deserializer for "janusgraph:RelationIdentifier" not found

 

Hello again – I’m responding to this thread. I saw the response to my original email via the web interface, but never received it by email, so cannot send this as a reply to that email.

 

In my original email I said:

 

Hi All – I’m getting error “Deserializer for "janusgraph:RelationIdentifier" not found” when executing the below traversal using JanusGraph.Net:

 

await gtx.AddV("person").AddE("whatever").Promise(t => t.Iterate());

 

Florian Hockmann was very helpful to reply with:

 

the error is telling you that Gremlin.Net cannot deserialize the GraphSON type “janusgraph:RelationIdentifier”. That’s because it’s a JanusGraph specific type and Gremlin.Net doesn’t know anything about such types.

 

That is why we’ve built JanusGraph.Net: https://github.com/JanusGraph/janusgraph-dotnet/

It’s a .NET library that simply extends Gremlin.Net for such JanusGraph specific types like RelationIdentifier. Switching to that library should solve these problems. It also make it easy to always have a version of the .NET driver that is compatible with your JanusGraph Server version.

 

However, I was actually using the JanusGraph.Net client – specifically version 0.4.1, the latest available on NuGet.

 

Am I not using JanusGraph.Net correctly?

 

Regards,

Bill


Re: Java Heap Space - Vertex.edges

hadoopmarc@...
 

Hi Joe,

Can you take a look at this blog from Boxuan Li:  https://li-boxuan.medium.com/janusgraph-deep-dive-part-3-speed-up-edge-queries-3b9eb5ba34f8

In general, it is better to use the TinkerPop API starting with g.V(). This makes sure you do not skip query optimizations. In addition, it makes your code more portable with respect to other TinkerPop-compatible graph systems.

I am not sure though if this will really help for your use case, but give it a try!

Best wishes,     Marc


Deserializer for "janusgraph:RelationIdentifier" not found

bill.poole@...
 

Hello again – I’m responding to this thread. I saw the response to my original email via the web interface, but never received it by email, so cannot send this as a reply to that email.

 

In my original email I said:

 

Hi All – I’m getting error “Deserializer for "janusgraph:RelationIdentifier" not found” when executing the below traversal using JanusGraph.Net:

 

await gtx.AddV("person").AddE("whatever").Promise(t => t.Iterate());

 

Florian Hockmann was very helpful to reply with:

 

the error is telling you that Gremlin.Net cannot deserialize the GraphSON type “janusgraph:RelationIdentifier”. That’s because it’s a JanusGraph specific type and Gremlin.Net doesn’t know anything about such types.

 

That is why we’ve built JanusGraph.Net: https://github.com/JanusGraph/janusgraph-dotnet/

It’s a .NET library that simply extends Gremlin.Net for such JanusGraph specific types like RelationIdentifier. Switching to that library should solve these problems. It also make it easy to always have a version of the .NET driver that is compatible with your JanusGraph Server version.

 

However, I was actually using the JanusGraph.Net client – specifically version 0.4.1, the latest available on NuGet.

 

Am I not using JanusGraph.Net correctly?

 

Regards,

Bill


Re: Deserializer for "janusgraph:RelationIdentifier" not found

Florian Hockmann
 

Hi Bill,

 

the error is telling you that Gremlin.Net cannot deserialize the GraphSON type “janusgraph:RelationIdentifier”. That’s because it’s a JanusGraph specific type and Gremlin.Net doesn’t know anything about such types.

 

That is why we’ve built JanusGraph.Net: https://github.com/JanusGraph/janusgraph-dotnet/

It’s a .NET library that simply extends Gremlin.Net for such JanusGraph specific types like RelationIdentifier. Switching to that library should solve these problems. It also make it easy to always have a version of the .NET driver that is compatible with your JanusGraph Server version.

 

If you don’t want to use JanusGraph.Net, then you could also try working around this. You simply need to ensure that the traversal doesn’t return a JanusGraph specific type. In your case, you don’t want anything back any way, so you can simply append a `constant(1)` which returns ‘1’ that is then ignored by the driver since you’re using `Iterate()`:

 

await gtx.AddV("person").AddE("whatever").Constant(1).Promise(t => t.Iterate());

 

Regards,

Florian

 

Von: janusgraph-users@... <janusgraph-users@...> Im Auftrag von bill.poole via lists.lfaidata.foundation
Gesendet: Donnerstag, 25. August 2022 20:54
An: janusgraph-users@...
Betreff: [janusgraph-users] Deserializer for "janusgraph:RelationIdentifier" not found

 

Hi All – I’m getting error “Deserializer for "janusgraph:RelationIdentifier" not found” when executing the below traversal using JanusGraph.Net:

 

await gtx.AddV("person").AddE("whatever").Promise(t => t.Iterate());

 

The stack trace:

 

System.InvalidOperationException: Deserializer for "janusgraph:RelationIdentifier" not found

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ReadValueOfType(JsonElement typedValue, String graphSONType)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ToObject(JsonElement graphSon)

   at Gremlin.Net.Structure.IO.GraphSON.EdgeDeserializer.Objectify(JsonElement graphsonObject, GraphSONReader reader)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ReadValueOfType(JsonElement typedValue, String graphSONType)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ToObject(JsonElement graphSon)

   at Gremlin.Net.Structure.IO.GraphSON.TraverserReader.Objectify(JsonElement graphsonObject, GraphSONReader reader)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ReadValueOfType(JsonElement typedValue, String graphSONType)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ToObject(JsonElement graphSon)

   at Gremlin.Net.Structure.IO.GraphSON.ListSerializer.Objectify(JsonElement graphsonObject, GraphSONReader reader)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ReadValueOfType(JsonElement typedValue, String graphSONType)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ToObject(JsonElement graphSon)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONMessageSerializer.DeserializeMessageAsync(Byte[] message)

   at Gremlin.Net.Driver.Connection.HandleReceivedAsync(Byte[] received)

   at Gremlin.Net.Driver.Connection.ReceiveMessagesAsync()

   at Gremlin.Net.Driver.ProxyConnection.SubmitAsync[T](RequestMessage requestMessage)

   at Gremlin.Net.Driver.GremlinClient.SubmitAsync[T](RequestMessage requestMessage)

   at Gremlin.Net.Driver.Remote.DriverRemoteConnection.SubmitBytecodeAsync(Guid requestid, Bytecode bytecode)

   at Gremlin.Net.Driver.Remote.DriverRemoteConnection.SubmitAsync[S,E](Bytecode bytecode)

   at Gremlin.Net.Process.Remote.RemoteStrategy.ApplyAsync[S,E](ITraversal`2 traversal)

   at Gremlin.Net.Process.Traversal.DefaultTraversal`2.ApplyStrategiesAsync()

   at Gremlin.Net.Process.Traversal.DefaultTraversal`2.Promise[TReturn](Func`2 callback)

 

I get this error any time I add any edge. Any help would be greatly appreciated!

 

-Bill


Deserializer for "janusgraph:RelationIdentifier" not found

bill.poole@...
 

Hi All – I’m getting error “Deserializer for "janusgraph:RelationIdentifier" not found” when executing the below traversal using JanusGraph.Net:

 

await gtx.AddV("person").AddE("whatever").Promise(t => t.Iterate());

 

The stack trace:

 

System.InvalidOperationException: Deserializer for "janusgraph:RelationIdentifier" not found

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ReadValueOfType(JsonElement typedValue, String graphSONType)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ToObject(JsonElement graphSon)

   at Gremlin.Net.Structure.IO.GraphSON.EdgeDeserializer.Objectify(JsonElement graphsonObject, GraphSONReader reader)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ReadValueOfType(JsonElement typedValue, String graphSONType)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ToObject(JsonElement graphSon)

   at Gremlin.Net.Structure.IO.GraphSON.TraverserReader.Objectify(JsonElement graphsonObject, GraphSONReader reader)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ReadValueOfType(JsonElement typedValue, String graphSONType)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ToObject(JsonElement graphSon)

   at Gremlin.Net.Structure.IO.GraphSON.ListSerializer.Objectify(JsonElement graphsonObject, GraphSONReader reader)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ReadValueOfType(JsonElement typedValue, String graphSONType)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONReader.ToObject(JsonElement graphSon)

   at Gremlin.Net.Structure.IO.GraphSON.GraphSONMessageSerializer.DeserializeMessageAsync(Byte[] message)

   at Gremlin.Net.Driver.Connection.HandleReceivedAsync(Byte[] received)

   at Gremlin.Net.Driver.Connection.ReceiveMessagesAsync()

   at Gremlin.Net.Driver.ProxyConnection.SubmitAsync[T](RequestMessage requestMessage)

   at Gremlin.Net.Driver.GremlinClient.SubmitAsync[T](RequestMessage requestMessage)

   at Gremlin.Net.Driver.Remote.DriverRemoteConnection.SubmitBytecodeAsync(Guid requestid, Bytecode bytecode)

   at Gremlin.Net.Driver.Remote.DriverRemoteConnection.SubmitAsync[S,E](Bytecode bytecode)

   at Gremlin.Net.Process.Remote.RemoteStrategy.ApplyAsync[S,E](ITraversal`2 traversal)

   at Gremlin.Net.Process.Traversal.DefaultTraversal`2.ApplyStrategiesAsync()

   at Gremlin.Net.Process.Traversal.DefaultTraversal`2.Promise[TReturn](Func`2 callback)

 

I get this error any time I add any edge. Any help would be greatly appreciated!

 

-Bill


Java Heap Space - Vertex.edges

Joe Obernberger
 

Hi all - I'm getting the following exception:

org.janusgraph.core.JanusGraphException: Could not execute operation due to backend exception
        at org.janusgraph.diskstorage.util.BackendOperation.execute(BackendOperation.java:54)
        at org.janusgraph.diskstorage.BackendTransaction.executeRead(BackendTransaction.java:488)
        at org.janusgraph.diskstorage.BackendTransaction.edgeStoreQuery(BackendTransaction.java:271)
        at org.janusgraph.graphdb.database.StandardJanusGraph.edgeQuery(StandardJanusGraph.java:490)
        at org.janusgraph.graphdb.transaction.StandardJanusGraphTx$2.lambda$execute$1(StandardJanusGraphTx.java:1320)
        at org.janusgraph.graphdb.query.profile.QueryProfiler.profile(QueryProfiler.java:107)
        at org.janusgraph.graphdb.query.profile.QueryProfiler.profile(QueryProfiler.java:99)
        at org.janusgraph.graphdb.query.profile.QueryProfiler.profile(QueryProfiler.java:95)
        at org.janusgraph.graphdb.transaction.StandardJanusGraphTx$2.lambda$execute$2(StandardJanusGraphTx.java:1320)
        at org.janusgraph.graphdb.vertices.CacheVertex.loadRelations(CacheVertex.java:73)
        at org.janusgraph.graphdb.transaction.StandardJanusGraphTx$2.execute(StandardJanusGraphTx.java:1320)
        at org.janusgraph.graphdb.transaction.StandardJanusGraphTx$2.execute(StandardJanusGraphTx.java:1231)
        at org.janusgraph.graphdb.query.QueryProcessor$LimitAdjustingIterator.getNewIterator(QueryProcessor.java:206)
        at org.janusgraph.graphdb.query.LimitAdjustingIterator.hasNext(LimitAdjustingIterator.java:69)
        at org.janusgraph.graphdb.util.CloseableIteratorUtils$1.computeNext(CloseableIteratorUtils.java:49)
        at com.google.common.collect.AbstractIterator.tryToComputeNext(AbstractIterator.java:146)
        at com.google.common.collect.AbstractIterator.hasNext(AbstractIterator.java:141)
        at org.janusgraph.graphdb.query.ResultSetIterator.nextInternal(ResultSetIterator.java:55)
        at org.janusgraph.graphdb.query.ResultSetIterator.<init>(ResultSetIterator.java:45)
        at org.janusgraph.graphdb.query.QueryProcessor.iterator(QueryProcessor.java:68)
        at org.janusgraph.graphdb.query.QueryProcessor.iterator(QueryProcessor.java:49)
        at org.janusgraph.graphdb.vertices.AbstractVertex.edges(AbstractVertex.java:194)
        at com.comp.helios.heliosgraphcorrelationservice.threads.HandleCorrelationIDThread.handleCorrelationID(HandleCorrelationIDThread.java:145)
        at com.comp.helios.heliosgraphcorrelationservice.threads.HandleCorrelationIDThread.run(HandleCorrelationIDThread.java:68)
        at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
        at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
        at java.base/java.lang.Thread.run(Thread.java:829)
Caused by: org.janusgraph.diskstorage.PermanentBackendException: Permanent exception while executing backend operation EdgeStoreQuery
        at org.janusgraph.diskstorage.util.BackendOperation.executeDirect(BackendOperation.java:79)
        at org.janusgraph.diskstorage.util.BackendOperation.execute(BackendOperation.java:52)
        ... 26 more
Caused by: java.lang.OutOfMemoryError: Java heap space

The line of interest:

Iterator<Edge> edgeIt = correlationVertex.edges(Direction.IN);

That vertex (correlationVertex) may have a lot of OUT bound edges - maybe in the millions.  Does this try to load those into RAM? The number of INbound edges is small - maybe 5.
Ideas?

Thank you!

-Joe


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Re: berkeleyje and lucene NoSuchMethodError

queshaw
 

Thank you! I haven't gotten past that point now

On Monday, August 22, 2022 10:46 AM, Boxuan Li <liboxuan@...> wrote:


It seems you introduced TinkerPop 3.6.1 which is not compatible with JanusGraph 0.6.2.


On Aug 23, 2022, at 1:28 AM, queshaw via lists.lfaidata.foundation <queshaw=use.startmail.com@...> wrote:

I am using gradle. The jars for lucene and and berkekeyje weren't installed in my local maven repository. So, my dependencies are:

jar files in my libs directory:

janusgraph-berkeleyje-0.6.2.jar
janusgraph-lucene-0.6.2.jar

then:

compileClasspath - Compile classpath for source set 'main'.
+--- org.janusgraph:janusgraph-core:0.6.2
|    +--- org.janusgraph:janusgraph-driver:0.6.2
|    |    +--- org.apache.tinkerpop:gremlin-core:3.5.3 -> 3.6.1
|    |    |    +--- org.apache.tinkerpop:gremlin-shaded:3.6.1
|    |    |    +--- org.apache.tinkerpop:gremlin-language:3.6.1
|    |    |    |    +--- org.antlr:antlr4-runtime:4.9.1
|    |    |    |    +--- org.javatuples:javatuples:1.2
|    |    |    |    \--- org.apache.commons:commons-text:1.9
|    |    |    |         \--- org.apache.commons:commons-lang3:3.11
|    |    |    +--- org.apache.commons:commons-configuration2:2.7
|    |    |    |    +--- org.apache.commons:commons-lang3:3.9 -> 3.11
|    |    |    |    +--- org.apache.commons:commons-text:1.8 -> 1.9 (*)
|    |    |    |    \--- commons-logging:commons-logging:1.2
|    |    |    +--- commons-beanutils:commons-beanutils:1.9.4
|    |    |    |    +--- commons-logging:commons-logging:1.2
|    |    |    |    \--- commons-collections:commons-collections:3.2.2
|    |    |    +--- commons-collections:commons-collections:3.2.2
|    |    |    +--- org.apache.commons:commons-lang3:3.11
|    |    |    +--- org.yaml:snakeyaml:1.27
|    |    |    +--- com.carrotsearch:hppc:0.7.1 -> 0.8.2
|    |    |    +--- com.jcabi:jcabi-manifests:1.2.1
|    |    |    |    \--- com.jcabi:jcabi-log:0.20.0
|    |    |    |         \--- org.mockito:mockito-core:3.4.6
|    |    |    |              +--- net.bytebuddy:byte-buddy:1.10.13
|    |    |    |              +--- net.bytebuddy:byte-buddy-agent:1.10.13
|    |    |    |              \--- org.objenesis:objenesis:2.6
|    |    |    +--- net.objecthunter:exp4j:0.4.8
|    |    |    +--- org.slf4j:slf4j-api:1.7.25 -> 1.7.30
|    |    |    \--- org.slf4j:jcl-over-slf4j:1.7.25
|    |    |         \--- org.slf4j:slf4j-api:1.7.25 -> 1.7.30
|    |    +--- org.apache.tinkerpop:gremlin-driver:3.5.3 -> 3.6.1
|    |    |    +--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)
|    |    |    +--- io.netty:netty-all:4.1.77.Final
|    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-dns:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-haproxy:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-http:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-http2:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-memcache:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-mqtt:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-redis:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-smtp:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-socks:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-stomp:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-xml:4.1.77.Final
|    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    +--- io.netty:netty-handler:4.1.77.Final
|    |    |    |    +--- io.netty:netty-handler-proxy:4.1.77.Final
|    |    |    |    +--- io.netty:netty-resolver:4.1.77.Final
|    |    |    |    +--- io.netty:netty-resolver-dns:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-rxtx:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-sctp:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-udt:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-classes-epoll:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-native-unix-common:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-classes-kqueue:4.1.77.Final
|    |    |    |    \--- io.netty:netty-resolver-dns-classes-macos:4.1.77.Final
|    |    |    \--- org.apache.commons:commons-lang3:3.11
|    |    +--- org.apache.tinkerpop:gremlin-groovy:3.5.3
|    |    |    +--- org.apache.tinkerpop:gremlin-core:3.5.3 -> 3.6.1 (*)
|    |    |    +--- org.apache.ivy:ivy:2.4.0
|    |    |    +--- org.codehaus.groovy:groovy:2.5.14
|    |    |    +--- org.codehaus.groovy:groovy-groovysh:2.5.14
|    |    |    |    +--- org.codehaus.groovy:groovy-cli-picocli:2.5.14
|    |    |    |    |    \--- info.picocli:picocli:4.3.2
|    |    |    |    +--- org.codehaus.groovy:groovy-console:2.5.14
|    |    |    |    |    +--- org.codehaus.groovy:groovy-templates:2.5.14
|    |    |    |    |    |    \--- org.codehaus.groovy:groovy-xml:2.5.14
|    |    |    |    |    +--- org.codehaus.groovy:groovy-cli-picocli:2.5.14 (*)
|    |    |    |    |    \--- org.codehaus.groovy:groovy-swing:2.5.14
|    |    |    |    \--- jline:jline:2.14.6
|    |    |    +--- org.codehaus.groovy:groovy-json:2.5.14
|    |    |    +--- org.codehaus.groovy:groovy-jsr223:2.5.14
|    |    |    +--- org.apache.commons:commons-lang3:3.11
|    |    |    +--- org.mindrot:jbcrypt:0.4
|    |    |    \--- com.github.ben-manes.caffeine:caffeine:2.3.1
|    |    +--- com.google.guava:guava:29.0-jre
|    |    |    +--- com.google.guava:failureaccess:1.0.1
|    |    |    +--- com.google.guava:listenablefuture:9999.0-empty-to-avoid-conflict-with-guava
|    |    |    +--- com.google.code.findbugs:jsr305:3.0.2
|    |    |    +--- org.checkerframework:checker-qual:2.11.1
|    |    |    +--- com.google.errorprone:error_prone_annotations:2.3.4
|    |    |    \--- com.google.j2objc:j2objc-annotations:1.3
|    |    +--- org.noggit:noggit:0.8
|    |    +--- org.locationtech.spatial4j:spatial4j:0.8
|    |    +--- org.locationtech.jts:jts-core:1.17.0
|    |    +--- org.apache.commons:commons-text:1.9 (*)
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- org.apache.tinkerpop:tinkergraph-gremlin:3.5.3 -> 3.6.1
|    |    +--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)
|    |    \--- org.apache.commons:commons-lang3:3.11
|    +--- org.glassfish:javax.json:1.1.4
|    +--- io.dropwizard.metrics:metrics-core:4.1.18
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- io.dropwizard.metrics:metrics-graphite:4.1.18
|    |    +--- io.dropwizard.metrics:metrics-core:4.1.18 (*)
|    |    +--- com.rabbitmq:amqp-client:5.11.0
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- io.dropwizard.metrics:metrics-jmx:4.1.18
|    |    +--- io.dropwizard.metrics:metrics-core:4.1.18 (*)
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- net.oneandone.reflections8:reflections8:0.11.7
|    |    \--- org.javassist:javassist:3.22.0-GA
|    +--- commons-collections:commons-collections:3.2.2
|    +--- commons-configuration:commons-configuration:1.10
|    |    +--- commons-lang:commons-lang:2.6
|    |    \--- commons-logging:commons-logging:1.1.1 -> 1.2
|    +--- org.apache.commons:commons-configuration2:2.7 (*)
|    +--- commons-io:commons-io:2.8.0
|    +--- commons-codec:commons-codec:1.15
|    +--- com.carrotsearch:hppc:0.8.2
|    +--- com.boundary:high-scale-lib:1.0.6
|    +--- com.google.code.findbugs:jsr305:3.0.2
|    \--- org.slf4j:slf4j-api:1.7.30
+--- com.sleepycat:je:18.3.12
+--- org.apache.lucene:lucene-core:7.7.2
+--- org.apache.lucene:lucene-analyzers-common:7.7.2
|    \--- org.apache.lucene:lucene-core:7.7.2
+--- org.apache.lucene:lucene-queryparser:7.7.2
|    +--- org.apache.lucene:lucene-core:7.7.2
|    +--- org.apache.lucene:lucene-queries:7.7.2
|    \--- org.apache.lucene:lucene-sandbox:7.7.2
+--- org.apache.lucene:lucene-spatial:7.7.2
|    \--- org.apache.lucene:lucene-core:7.7.2
+--- org.apache.lucene:lucene-spatial-extras:7.7.2
|    +--- org.apache.lucene:lucene-core:7.7.2
|    +--- org.apache.lucene:lucene-spatial3d:7.7.2
|    +--- io.sgr:s2-geometry-library-java:1.0.0
|    \--- org.locationtech.spatial4j:spatial4j:0.7 -> 0.8
+--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)
+--- org.apache.tinkerpop:gremlin-driver:3.6.1 (*)
\--- org.apache.tinkerpop:tinkergraph-gremlin:3.6.1 (*)

compileOnly - Compile only dependencies for source set 'main'. (n)
No dependencies

default - Configuration for default artifacts. (n)
No dependencies

implementation - Implementation only dependencies for source set 'main'. (n)
+--- org.janusgraph:janusgraph-core:0.6.2 (n)
+--- unspecified (n)
+--- com.sleepycat:je:18.3.12 (n)
+--- org.apache.lucene:lucene-core:7.7.2 (n)
+--- org.apache.lucene:lucene-analyzers-common:7.7.2 (n)
+--- org.apache.lucene:lucene-queryparser:7.7.2 (n)
+--- org.apache.lucene:lucene-spatial:7.7.2 (n)
+--- org.apache.lucene:lucene-spatial-extras:7.7.2 (n)
+--- org.apache.tinkerpop:gremlin-core:3.6.1 (n)
+--- org.apache.tinkerpop:gremlin-driver:3.6.1 (n)
\--- org.apache.tinkerpop:tinkergraph-gremlin:3.6.1 (n)

mainSourceElements - List of source directories contained in the Main SourceSet. (n)
No dependencies

runtimeClasspath - Runtime classpath of source set 'main'.
+--- org.janusgraph:janusgraph-core:0.6.2
|    +--- org.janusgraph:janusgraph-driver:0.6.2
|    |    +--- org.apache.tinkerpop:gremlin-core:3.5.3 -> 3.6.1
|    |    |    +--- org.apache.tinkerpop:gremlin-shaded:3.6.1
|    |    |    +--- org.apache.tinkerpop:gremlin-language:3.6.1
|    |    |    |    +--- org.antlr:antlr4-runtime:4.9.1
|    |    |    |    +--- org.javatuples:javatuples:1.2
|    |    |    |    \--- org.apache.commons:commons-text:1.9
|    |    |    |         \--- org.apache.commons:commons-lang3:3.11
|    |    |    +--- org.apache.commons:commons-configuration2:2.7
|    |    |    |    +--- org.apache.commons:commons-lang3:3.9 -> 3.11
|    |    |    |    +--- org.apache.commons:commons-text:1.8 -> 1.9 (*)
|    |    |    |    \--- commons-logging:commons-logging:1.2
|    |    |    +--- commons-beanutils:commons-beanutils:1.9.4
|    |    |    |    +--- commons-logging:commons-logging:1.2
|    |    |    |    \--- commons-collections:commons-collections:3.2.2
|    |    |    +--- commons-collections:commons-collections:3.2.2
|    |    |    +--- org.apache.commons:commons-lang3:3.11
|    |    |    +--- org.yaml:snakeyaml:1.27
|    |    |    +--- com.carrotsearch:hppc:0.7.1 -> 0.8.2
|    |    |    +--- com.jcabi:jcabi-manifests:1.2.1
|    |    |    |    \--- com.jcabi:jcabi-log:0.20.0
|    |    |    |         \--- org.mockito:mockito-core:3.4.6
|    |    |    |              +--- net.bytebuddy:byte-buddy:1.10.13
|    |    |    |              +--- net.bytebuddy:byte-buddy-agent:1.10.13
|    |    |    |              \--- org.objenesis:objenesis:2.6
|    |    |    +--- net.objecthunter:exp4j:0.4.8
|    |    |    +--- org.slf4j:slf4j-api:1.7.25 -> 1.7.30
|    |    |    \--- org.slf4j:jcl-over-slf4j:1.7.25
|    |    |         \--- org.slf4j:slf4j-api:1.7.25 -> 1.7.30
|    |    +--- org.apache.tinkerpop:gremlin-driver:3.5.3 -> 3.6.1
|    |    |    +--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)
|    |    |    +--- io.netty:netty-all:4.1.77.Final
|    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final
|    |    |    |    |    \--- io.netty:netty-common:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-transport:4.1.77.Final
|    |    |    |    |         +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |         +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |         \--- io.netty:netty-resolver:4.1.77.Final
|    |    |    |    |              \--- io.netty:netty-common:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-dns:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-codec:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-codec-haproxy:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-http:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-http2:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-memcache:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-mqtt:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-redis:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-smtp:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-socks:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-stomp:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-xml:4.1.77.Final
|    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    +--- io.netty:netty-handler:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-resolver:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-codec:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-handler-proxy:4.1.77.Final
|    |    |    |    +--- io.netty:netty-resolver:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-resolver-dns:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-resolver:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-codec:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-codec-dns:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-handler:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-transport-rxtx:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-sctp:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-udt:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-classes-epoll:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-transport-native-unix-common:4.1.77.Final
|    |    |    |    |         +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |         +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |         \--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-transport-classes-kqueue:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-resolver-dns-classes-macos:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-resolver-dns:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-transport-native-epoll:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-transport-classes-epoll:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-transport-native-kqueue:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-transport-classes-kqueue:4.1.77.Final (*)
|    |    |    |    \--- io.netty:netty-resolver-dns-native-macos:4.1.77.Final
|    |    |    |         \--- io.netty:netty-resolver-dns-classes-macos:4.1.77.Final (*)
|    |    |    \--- org.apache.commons:commons-lang3:3.11
|    |    +--- org.apache.tinkerpop:gremlin-groovy:3.5.3
|    |    |    +--- org.apache.tinkerpop:gremlin-core:3.5.3 -> 3.6.1 (*)
|    |    |    +--- org.apache.ivy:ivy:2.4.0
|    |    |    +--- org.codehaus.groovy:groovy:2.5.14
|    |    |    +--- org.codehaus.groovy:groovy-groovysh:2.5.14
|    |    |    |    +--- org.codehaus.groovy:groovy-cli-picocli:2.5.14
|    |    |    |    |    \--- info.picocli:picocli:4.3.2
|    |    |    |    +--- org.codehaus.groovy:groovy-console:2.5.14
|    |    |    |    |    +--- org.codehaus.groovy:groovy-templates:2.5.14
|    |    |    |    |    |    \--- org.codehaus.groovy:groovy-xml:2.5.14
|    |    |    |    |    +--- org.codehaus.groovy:groovy-cli-picocli:2.5.14 (*)
|    |    |    |    |    \--- org.codehaus.groovy:groovy-swing:2.5.14
|    |    |    |    \--- jline:jline:2.14.6
|    |    |    +--- org.codehaus.groovy:groovy-json:2.5.14
|    |    |    +--- org.codehaus.groovy:groovy-jsr223:2.5.14
|    |    |    +--- org.apache.commons:commons-lang3:3.11
|    |    |    +--- org.mindrot:jbcrypt:0.4
|    |    |    \--- com.github.ben-manes.caffeine:caffeine:2.3.1
|    |    +--- com.google.guava:guava:29.0-jre
|    |    |    +--- com.google.guava:failureaccess:1.0.1
|    |    |    +--- com.google.guava:listenablefuture:9999.0-empty-to-avoid-conflict-with-guava
|    |    |    +--- com.google.code.findbugs:jsr305:3.0.2
|    |    |    +--- org.checkerframework:checker-qual:2.11.1
|    |    |    +--- com.google.errorprone:error_prone_annotations:2.3.4
|    |    |    \--- com.google.j2objc:j2objc-annotations:1.3
|    |    +--- org.noggit:noggit:0.8
|    |    +--- org.locationtech.spatial4j:spatial4j:0.8
|    |    +--- org.locationtech.jts:jts-core:1.17.0
|    |    +--- org.apache.commons:commons-text:1.9 (*)
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- org.apache.tinkerpop:tinkergraph-gremlin:3.5.3 -> 3.6.1
|    |    +--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)
|    |    \--- org.apache.commons:commons-lang3:3.11
|    +--- org.glassfish:javax.json:1.1.4
|    +--- io.dropwizard.metrics:metrics-core:4.1.18
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- io.dropwizard.metrics:metrics-graphite:4.1.18
|    |    +--- io.dropwizard.metrics:metrics-core:4.1.18 (*)
|    |    +--- com.rabbitmq:amqp-client:5.11.0
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- io.dropwizard.metrics:metrics-jmx:4.1.18
|    |    +--- io.dropwizard.metrics:metrics-core:4.1.18 (*)
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- net.oneandone.reflections8:reflections8:0.11.7
|    |    \--- org.javassist:javassist:3.22.0-GA
|    +--- commons-collections:commons-collections:3.2.2
|    +--- commons-configuration:commons-configuration:1.10
|    |    +--- commons-lang:commons-lang:2.6
|    |    \--- commons-logging:commons-logging:1.1.1 -> 1.2
|    +--- org.apache.commons:commons-configuration2:2.7 (*)
|    +--- commons-io:commons-io:2.8.0
|    +--- commons-codec:commons-codec:1.15
|    +--- com.carrotsearch:hppc:0.8.2
|    +--- com.boundary:high-scale-lib:1.0.6
|    +--- com.google.code.findbugs:jsr305:3.0.2
|    \--- org.slf4j:slf4j-api:1.7.30
+--- com.sleepycat:je:18.3.12
+--- org.apache.lucene:lucene-core:7.7.2
+--- org.apache.lucene:lucene-analyzers-common:7.7.2
|    \--- org.apache.lucene:lucene-core:7.7.2
+--- org.apache.lucene:lucene-queryparser:7.7.2
|    +--- org.apache.lucene:lucene-core:7.7.2
|    +--- org.apache.lucene:lucene-queries:7.7.2
|    \--- org.apache.lucene:lucene-sandbox:7.7.2
+--- org.apache.lucene:lucene-spatial:7.7.2
|    \--- org.apache.lucene:lucene-core:7.7.2
+--- org.apache.lucene:lucene-spatial-extras:7.7.2
|    +--- org.apache.lucene:lucene-core:7.7.2
|    +--- org.apache.lucene:lucene-spatial3d:7.7.2
|    +--- io.sgr:s2-geometry-library-java:1.0.0
|    \--- org.locationtech.spatial4j:spatial4j:0.7 -> 0.8
+--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)
+--- org.apache.tinkerpop:gremlin-driver:3.6.1 (*)
\--- org.apache.tinkerpop:tinkergraph-gremlin:3.6.1 (*)

runtimeElements - Elements of runtime for main. (n)
No dependencies

runtimeOnly - Runtime only dependencies for source set 'main'. (n)
No dependencies

Thanks



On Monday, August 22, 2022 8:24 AM, hadoopmarc@... wrote:
Probably, janusgraph and tinkerpop versions got mixed up. If you use maven, can you show the janusgraph dependencies you used in the pom.xml (and tinkerpop if present in the pom.xml).

Best wishes,    Marc 




Re: berkeleyje and lucene NoSuchMethodError

Boxuan Li
 

Janusgraph 0.6.2 ships with TinkerPop 3.5.3: https://docs.janusgraph.org/changelog/#version-062-release-date-may-31-2022

It seems you introduced TinkerPop 3.6.1 which is not compatible with JanusGraph 0.6.2.

On Aug 23, 2022, at 1:28 AM, queshaw via lists.lfaidata.foundation <queshaw=use.startmail.com@...> wrote:

I am using gradle. The jars for lucene and and berkekeyje weren't installed in my local maven repository. So, my dependencies are:

jar files in my libs directory:

janusgraph-berkeleyje-0.6.2.jar
janusgraph-lucene-0.6.2.jar

then:

compileClasspath - Compile classpath for source set 'main'.
+--- org.janusgraph:janusgraph-core:0.6.2
|    +--- org.janusgraph:janusgraph-driver:0.6.2
|    |    +--- org.apache.tinkerpop:gremlin-core:3.5.3 -> 3.6.1
|    |    |    +--- org.apache.tinkerpop:gremlin-shaded:3.6.1
|    |    |    +--- org.apache.tinkerpop:gremlin-language:3.6.1
|    |    |    |    +--- org.antlr:antlr4-runtime:4.9.1
|    |    |    |    +--- org.javatuples:javatuples:1.2
|    |    |    |    \--- org.apache.commons:commons-text:1.9
|    |    |    |         \--- org.apache.commons:commons-lang3:3.11
|    |    |    +--- org.apache.commons:commons-configuration2:2.7
|    |    |    |    +--- org.apache.commons:commons-lang3:3.9 -> 3.11
|    |    |    |    +--- org.apache.commons:commons-text:1.8 -> 1.9 (*)
|    |    |    |    \--- commons-logging:commons-logging:1.2
|    |    |    +--- commons-beanutils:commons-beanutils:1.9.4
|    |    |    |    +--- commons-logging:commons-logging:1.2
|    |    |    |    \--- commons-collections:commons-collections:3.2.2
|    |    |    +--- commons-collections:commons-collections:3.2.2
|    |    |    +--- org.apache.commons:commons-lang3:3.11
|    |    |    +--- org.yaml:snakeyaml:1.27
|    |    |    +--- com.carrotsearch:hppc:0.7.1 -> 0.8.2
|    |    |    +--- com.jcabi:jcabi-manifests:1.2.1
|    |    |    |    \--- com.jcabi:jcabi-log:0.20.0
|    |    |    |         \--- org.mockito:mockito-core:3.4.6
|    |    |    |              +--- net.bytebuddy:byte-buddy:1.10.13
|    |    |    |              +--- net.bytebuddy:byte-buddy-agent:1.10.13
|    |    |    |              \--- org.objenesis:objenesis:2.6
|    |    |    +--- net.objecthunter:exp4j:0.4.8
|    |    |    +--- org.slf4j:slf4j-api:1.7.25 -> 1.7.30
|    |    |    \--- org.slf4j:jcl-over-slf4j:1.7.25
|    |    |         \--- org.slf4j:slf4j-api:1.7.25 -> 1.7.30
|    |    +--- org.apache.tinkerpop:gremlin-driver:3.5.3 -> 3.6.1
|    |    |    +--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)
|    |    |    +--- io.netty:netty-all:4.1.77.Final
|    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-dns:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-haproxy:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-http:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-http2:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-memcache:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-mqtt:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-redis:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-smtp:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-socks:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-stomp:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-xml:4.1.77.Final
|    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    +--- io.netty:netty-handler:4.1.77.Final
|    |    |    |    +--- io.netty:netty-handler-proxy:4.1.77.Final
|    |    |    |    +--- io.netty:netty-resolver:4.1.77.Final
|    |    |    |    +--- io.netty:netty-resolver-dns:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-rxtx:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-sctp:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-udt:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-classes-epoll:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-native-unix-common:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-classes-kqueue:4.1.77.Final
|    |    |    |    \--- io.netty:netty-resolver-dns-classes-macos:4.1.77.Final
|    |    |    \--- org.apache.commons:commons-lang3:3.11
|    |    +--- org.apache.tinkerpop:gremlin-groovy:3.5.3
|    |    |    +--- org.apache.tinkerpop:gremlin-core:3.5.3 -> 3.6.1 (*)
|    |    |    +--- org.apache.ivy:ivy:2.4.0
|    |    |    +--- org.codehaus.groovy:groovy:2.5.14
|    |    |    +--- org.codehaus.groovy:groovy-groovysh:2.5.14
|    |    |    |    +--- org.codehaus.groovy:groovy-cli-picocli:2.5.14
|    |    |    |    |    \--- info.picocli:picocli:4.3.2
|    |    |    |    +--- org.codehaus.groovy:groovy-console:2.5.14
|    |    |    |    |    +--- org.codehaus.groovy:groovy-templates:2.5.14
|    |    |    |    |    |    \--- org.codehaus.groovy:groovy-xml:2.5.14
|    |    |    |    |    +--- org.codehaus.groovy:groovy-cli-picocli:2.5.14 (*)
|    |    |    |    |    \--- org.codehaus.groovy:groovy-swing:2.5.14
|    |    |    |    \--- jline:jline:2.14.6
|    |    |    +--- org.codehaus.groovy:groovy-json:2.5.14
|    |    |    +--- org.codehaus.groovy:groovy-jsr223:2.5.14
|    |    |    +--- org.apache.commons:commons-lang3:3.11
|    |    |    +--- org.mindrot:jbcrypt:0.4
|    |    |    \--- com.github.ben-manes.caffeine:caffeine:2.3.1
|    |    +--- com.google.guava:guava:29.0-jre
|    |    |    +--- com.google.guava:failureaccess:1.0.1
|    |    |    +--- com.google.guava:listenablefuture:9999.0-empty-to-avoid-conflict-with-guava
|    |    |    +--- com.google.code.findbugs:jsr305:3.0.2
|    |    |    +--- org.checkerframework:checker-qual:2.11.1
|    |    |    +--- com.google.errorprone:error_prone_annotations:2.3.4
|    |    |    \--- com.google.j2objc:j2objc-annotations:1.3
|    |    +--- org.noggit:noggit:0.8
|    |    +--- org.locationtech.spatial4j:spatial4j:0.8
|    |    +--- org.locationtech.jts:jts-core:1.17.0
|    |    +--- org.apache.commons:commons-text:1.9 (*)
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- org.apache.tinkerpop:tinkergraph-gremlin:3.5.3 -> 3.6.1
|    |    +--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)
|    |    \--- org.apache.commons:commons-lang3:3.11
|    +--- org.glassfish:javax.json:1.1.4
|    +--- io.dropwizard.metrics:metrics-core:4.1.18
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- io.dropwizard.metrics:metrics-graphite:4.1.18
|    |    +--- io.dropwizard.metrics:metrics-core:4.1.18 (*)
|    |    +--- com.rabbitmq:amqp-client:5.11.0
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- io.dropwizard.metrics:metrics-jmx:4.1.18
|    |    +--- io.dropwizard.metrics:metrics-core:4.1.18 (*)
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- net.oneandone.reflections8:reflections8:0.11.7
|    |    \--- org.javassist:javassist:3.22.0-GA
|    +--- commons-collections:commons-collections:3.2.2
|    +--- commons-configuration:commons-configuration:1.10
|    |    +--- commons-lang:commons-lang:2.6
|    |    \--- commons-logging:commons-logging:1.1.1 -> 1.2
|    +--- org.apache.commons:commons-configuration2:2.7 (*)
|    +--- commons-io:commons-io:2.8.0
|    +--- commons-codec:commons-codec:1.15
|    +--- com.carrotsearch:hppc:0.8.2
|    +--- com.boundary:high-scale-lib:1.0.6
|    +--- com.google.code.findbugs:jsr305:3.0.2
|    \--- org.slf4j:slf4j-api:1.7.30
+--- com.sleepycat:je:18.3.12
+--- org.apache.lucene:lucene-core:7.7.2
+--- org.apache.lucene:lucene-analyzers-common:7.7.2
|    \--- org.apache.lucene:lucene-core:7.7.2
+--- org.apache.lucene:lucene-queryparser:7.7.2
|    +--- org.apache.lucene:lucene-core:7.7.2
|    +--- org.apache.lucene:lucene-queries:7.7.2
|    \--- org.apache.lucene:lucene-sandbox:7.7.2
+--- org.apache.lucene:lucene-spatial:7.7.2
|    \--- org.apache.lucene:lucene-core:7.7.2
+--- org.apache.lucene:lucene-spatial-extras:7.7.2
|    +--- org.apache.lucene:lucene-core:7.7.2
|    +--- org.apache.lucene:lucene-spatial3d:7.7.2
|    +--- io.sgr:s2-geometry-library-java:1.0.0
|    \--- org.locationtech.spatial4j:spatial4j:0.7 -> 0.8
+--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)
+--- org.apache.tinkerpop:gremlin-driver:3.6.1 (*)
\--- org.apache.tinkerpop:tinkergraph-gremlin:3.6.1 (*)

compileOnly - Compile only dependencies for source set 'main'. (n)
No dependencies

default - Configuration for default artifacts. (n)
No dependencies

implementation - Implementation only dependencies for source set 'main'. (n)
+--- org.janusgraph:janusgraph-core:0.6.2 (n)
+--- unspecified (n)
+--- com.sleepycat:je:18.3.12 (n)
+--- org.apache.lucene:lucene-core:7.7.2 (n)
+--- org.apache.lucene:lucene-analyzers-common:7.7.2 (n)
+--- org.apache.lucene:lucene-queryparser:7.7.2 (n)
+--- org.apache.lucene:lucene-spatial:7.7.2 (n)
+--- org.apache.lucene:lucene-spatial-extras:7.7.2 (n)
+--- org.apache.tinkerpop:gremlin-core:3.6.1 (n)
+--- org.apache.tinkerpop:gremlin-driver:3.6.1 (n)
\--- org.apache.tinkerpop:tinkergraph-gremlin:3.6.1 (n)

mainSourceElements - List of source directories contained in the Main SourceSet. (n)
No dependencies

runtimeClasspath - Runtime classpath of source set 'main'.
+--- org.janusgraph:janusgraph-core:0.6.2
|    +--- org.janusgraph:janusgraph-driver:0.6.2
|    |    +--- org.apache.tinkerpop:gremlin-core:3.5.3 -> 3.6.1
|    |    |    +--- org.apache.tinkerpop:gremlin-shaded:3.6.1
|    |    |    +--- org.apache.tinkerpop:gremlin-language:3.6.1
|    |    |    |    +--- org.antlr:antlr4-runtime:4.9.1
|    |    |    |    +--- org.javatuples:javatuples:1.2
|    |    |    |    \--- org.apache.commons:commons-text:1.9
|    |    |    |         \--- org.apache.commons:commons-lang3:3.11
|    |    |    +--- org.apache.commons:commons-configuration2:2.7
|    |    |    |    +--- org.apache.commons:commons-lang3:3.9 -> 3.11
|    |    |    |    +--- org.apache.commons:commons-text:1.8 -> 1.9 (*)
|    |    |    |    \--- commons-logging:commons-logging:1.2
|    |    |    +--- commons-beanutils:commons-beanutils:1.9.4
|    |    |    |    +--- commons-logging:commons-logging:1.2
|    |    |    |    \--- commons-collections:commons-collections:3.2.2
|    |    |    +--- commons-collections:commons-collections:3.2.2
|    |    |    +--- org.apache.commons:commons-lang3:3.11
|    |    |    +--- org.yaml:snakeyaml:1.27
|    |    |    +--- com.carrotsearch:hppc:0.7.1 -> 0.8.2
|    |    |    +--- com.jcabi:jcabi-manifests:1.2.1
|    |    |    |    \--- com.jcabi:jcabi-log:0.20.0
|    |    |    |         \--- org.mockito:mockito-core:3.4.6
|    |    |    |              +--- net.bytebuddy:byte-buddy:1.10.13
|    |    |    |              +--- net.bytebuddy:byte-buddy-agent:1.10.13
|    |    |    |              \--- org.objenesis:objenesis:2.6
|    |    |    +--- net.objecthunter:exp4j:0.4.8
|    |    |    +--- org.slf4j:slf4j-api:1.7.25 -> 1.7.30
|    |    |    \--- org.slf4j:jcl-over-slf4j:1.7.25
|    |    |         \--- org.slf4j:slf4j-api:1.7.25 -> 1.7.30
|    |    +--- org.apache.tinkerpop:gremlin-driver:3.5.3 -> 3.6.1
|    |    |    +--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)
|    |    |    +--- io.netty:netty-all:4.1.77.Final
|    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final
|    |    |    |    |    \--- io.netty:netty-common:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-transport:4.1.77.Final
|    |    |    |    |         +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |         +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |         \--- io.netty:netty-resolver:4.1.77.Final
|    |    |    |    |              \--- io.netty:netty-common:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-dns:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-codec:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-codec-haproxy:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-http:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-http2:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-memcache:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-mqtt:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-redis:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-smtp:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-socks:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-stomp:4.1.77.Final
|    |    |    |    +--- io.netty:netty-codec-xml:4.1.77.Final
|    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    +--- io.netty:netty-handler:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-resolver:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-codec:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-handler-proxy:4.1.77.Final
|    |    |    |    +--- io.netty:netty-resolver:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-resolver-dns:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-resolver:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-codec:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-codec-dns:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-handler:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-transport-rxtx:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-sctp:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-udt:4.1.77.Final
|    |    |    |    +--- io.netty:netty-transport-classes-epoll:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-transport-native-unix-common:4.1.77.Final
|    |    |    |    |         +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |         +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |         \--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-transport-classes-kqueue:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-resolver-dns-classes-macos:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-resolver-dns:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-transport-native-epoll:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-transport-classes-epoll:4.1.77.Final (*)
|    |    |    |    +--- io.netty:netty-transport-native-kqueue:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final
|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)
|    |    |    |    |    +--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)
|    |    |    |    |    \--- io.netty:netty-transport-classes-kqueue:4.1.77.Final (*)
|    |    |    |    \--- io.netty:netty-resolver-dns-native-macos:4.1.77.Final
|    |    |    |         \--- io.netty:netty-resolver-dns-classes-macos:4.1.77.Final (*)
|    |    |    \--- org.apache.commons:commons-lang3:3.11
|    |    +--- org.apache.tinkerpop:gremlin-groovy:3.5.3
|    |    |    +--- org.apache.tinkerpop:gremlin-core:3.5.3 -> 3.6.1 (*)
|    |    |    +--- org.apache.ivy:ivy:2.4.0
|    |    |    +--- org.codehaus.groovy:groovy:2.5.14
|    |    |    +--- org.codehaus.groovy:groovy-groovysh:2.5.14
|    |    |    |    +--- org.codehaus.groovy:groovy-cli-picocli:2.5.14
|    |    |    |    |    \--- info.picocli:picocli:4.3.2
|    |    |    |    +--- org.codehaus.groovy:groovy-console:2.5.14
|    |    |    |    |    +--- org.codehaus.groovy:groovy-templates:2.5.14
|    |    |    |    |    |    \--- org.codehaus.groovy:groovy-xml:2.5.14
|    |    |    |    |    +--- org.codehaus.groovy:groovy-cli-picocli:2.5.14 (*)
|    |    |    |    |    \--- org.codehaus.groovy:groovy-swing:2.5.14
|    |    |    |    \--- jline:jline:2.14.6
|    |    |    +--- org.codehaus.groovy:groovy-json:2.5.14
|    |    |    +--- org.codehaus.groovy:groovy-jsr223:2.5.14
|    |    |    +--- org.apache.commons:commons-lang3:3.11
|    |    |    +--- org.mindrot:jbcrypt:0.4
|    |    |    \--- com.github.ben-manes.caffeine:caffeine:2.3.1
|    |    +--- com.google.guava:guava:29.0-jre
|    |    |    +--- com.google.guava:failureaccess:1.0.1
|    |    |    +--- com.google.guava:listenablefuture:9999.0-empty-to-avoid-conflict-with-guava
|    |    |    +--- com.google.code.findbugs:jsr305:3.0.2
|    |    |    +--- org.checkerframework:checker-qual:2.11.1
|    |    |    +--- com.google.errorprone:error_prone_annotations:2.3.4
|    |    |    \--- com.google.j2objc:j2objc-annotations:1.3
|    |    +--- org.noggit:noggit:0.8
|    |    +--- org.locationtech.spatial4j:spatial4j:0.8
|    |    +--- org.locationtech.jts:jts-core:1.17.0
|    |    +--- org.apache.commons:commons-text:1.9 (*)
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- org.apache.tinkerpop:tinkergraph-gremlin:3.5.3 -> 3.6.1
|    |    +--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)
|    |    \--- org.apache.commons:commons-lang3:3.11
|    +--- org.glassfish:javax.json:1.1.4
|    +--- io.dropwizard.metrics:metrics-core:4.1.18
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- io.dropwizard.metrics:metrics-graphite:4.1.18
|    |    +--- io.dropwizard.metrics:metrics-core:4.1.18 (*)
|    |    +--- com.rabbitmq:amqp-client:5.11.0
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- io.dropwizard.metrics:metrics-jmx:4.1.18
|    |    +--- io.dropwizard.metrics:metrics-core:4.1.18 (*)
|    |    \--- org.slf4j:slf4j-api:1.7.30
|    +--- net.oneandone.reflections8:reflections8:0.11.7
|    |    \--- org.javassist:javassist:3.22.0-GA
|    +--- commons-collections:commons-collections:3.2.2
|    +--- commons-configuration:commons-configuration:1.10
|    |    +--- commons-lang:commons-lang:2.6
|    |    \--- commons-logging:commons-logging:1.1.1 -> 1.2
|    +--- org.apache.commons:commons-configuration2:2.7 (*)
|    +--- commons-io:commons-io:2.8.0
|    +--- commons-codec:commons-codec:1.15
|    +--- com.carrotsearch:hppc:0.8.2
|    +--- com.boundary:high-scale-lib:1.0.6
|    +--- com.google.code.findbugs:jsr305:3.0.2
|    \--- org.slf4j:slf4j-api:1.7.30
+--- com.sleepycat:je:18.3.12
+--- org.apache.lucene:lucene-core:7.7.2
+--- org.apache.lucene:lucene-analyzers-common:7.7.2
|    \--- org.apache.lucene:lucene-core:7.7.2
+--- org.apache.lucene:lucene-queryparser:7.7.2
|    +--- org.apache.lucene:lucene-core:7.7.2
|    +--- org.apache.lucene:lucene-queries:7.7.2
|    \--- org.apache.lucene:lucene-sandbox:7.7.2
+--- org.apache.lucene:lucene-spatial:7.7.2
|    \--- org.apache.lucene:lucene-core:7.7.2
+--- org.apache.lucene:lucene-spatial-extras:7.7.2
|    +--- org.apache.lucene:lucene-core:7.7.2
|    +--- org.apache.lucene:lucene-spatial3d:7.7.2
|    +--- io.sgr:s2-geometry-library-java:1.0.0
|    \--- org.locationtech.spatial4j:spatial4j:0.7 -> 0.8
+--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)
+--- org.apache.tinkerpop:gremlin-driver:3.6.1 (*)
\--- org.apache.tinkerpop:tinkergraph-gremlin:3.6.1 (*)

runtimeElements - Elements of runtime for main. (n)
No dependencies

runtimeOnly - Runtime only dependencies for source set 'main'. (n)
No dependencies

Thanks


On Monday, August 22, 2022 8:24 AM, hadoopmarc@... wrote:
Probably, janusgraph and tinkerpop versions got mixed up. If you use maven, can you show the janusgraph dependencies you used in the pom.xml (and tinkerpop if present in the pom.xml).

Best wishes,    Marc 




Re: berkeleyje and lucene NoSuchMethodError

queshaw
 

I am using gradle. The jars for lucene and and berkekeyje weren't installed in my local maven repository. So, my dependencies are:


jar files in my libs directory:


janusgraph-berkeleyje-0.6.2.jar

janusgraph-lucene-0.6.2.jar


then:


compileClasspath - Compile classpath for source set 'main'.

+--- org.janusgraph:janusgraph-core:0.6.2

|    +--- org.janusgraph:janusgraph-driver:0.6.2

|    |    +--- org.apache.tinkerpop:gremlin-core:3.5.3 -> 3.6.1

|    |    |    +--- org.apache.tinkerpop:gremlin-shaded:3.6.1

|    |    |    +--- org.apache.tinkerpop:gremlin-language:3.6.1

|    |    |    |    +--- org.antlr:antlr4-runtime:4.9.1

|    |    |    |    +--- org.javatuples:javatuples:1.2

|    |    |    |    \--- org.apache.commons:commons-text:1.9

|    |    |    |         \--- org.apache.commons:commons-lang3:3.11

|    |    |    +--- org.apache.commons:commons-configuration2:2.7

|    |    |    |    +--- org.apache.commons:commons-lang3:3.9 -> 3.11

|    |    |    |    +--- org.apache.commons:commons-text:1.8 -> 1.9 (*)

|    |    |    |    \--- commons-logging:commons-logging:1.2

|    |    |    +--- commons-beanutils:commons-beanutils:1.9.4

|    |    |    |    +--- commons-logging:commons-logging:1.2

|    |    |    |    \--- commons-collections:commons-collections:3.2.2

|    |    |    +--- commons-collections:commons-collections:3.2.2

|    |    |    +--- org.apache.commons:commons-lang3:3.11

|    |    |    +--- org.yaml:snakeyaml:1.27

|    |    |    +--- com.carrotsearch:hppc:0.7.1 -> 0.8.2

|    |    |    +--- com.jcabi:jcabi-manifests:1.2.1

|    |    |    |    \--- com.jcabi:jcabi-log:0.20.0

|    |    |    |         \--- org.mockito:mockito-core:3.4.6

|    |    |    |              +--- net.bytebuddy:byte-buddy:1.10.13

|    |    |    |              +--- net.bytebuddy:byte-buddy-agent:1.10.13

|    |    |    |              \--- org.objenesis:objenesis:2.6

|    |    |    +--- net.objecthunter:exp4j:0.4.8

|    |    |    +--- org.slf4j:slf4j-api:1.7.25 -> 1.7.30

|    |    |    \--- org.slf4j:jcl-over-slf4j:1.7.25

|    |    |         \--- org.slf4j:slf4j-api:1.7.25 -> 1.7.30

|    |    +--- org.apache.tinkerpop:gremlin-driver:3.5.3 -> 3.6.1

|    |    |    +--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)

|    |    |    +--- io.netty:netty-all:4.1.77.Final

|    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-dns:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-haproxy:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-http:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-http2:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-memcache:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-mqtt:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-redis:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-smtp:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-socks:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-stomp:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-xml:4.1.77.Final

|    |    |    |    +--- io.netty:netty-common:4.1.77.Final

|    |    |    |    +--- io.netty:netty-handler:4.1.77.Final

|    |    |    |    +--- io.netty:netty-handler-proxy:4.1.77.Final

|    |    |    |    +--- io.netty:netty-resolver:4.1.77.Final

|    |    |    |    +--- io.netty:netty-resolver-dns:4.1.77.Final

|    |    |    |    +--- io.netty:netty-transport:4.1.77.Final

|    |    |    |    +--- io.netty:netty-transport-rxtx:4.1.77.Final

|    |    |    |    +--- io.netty:netty-transport-sctp:4.1.77.Final

|    |    |    |    +--- io.netty:netty-transport-udt:4.1.77.Final

|    |    |    |    +--- io.netty:netty-transport-classes-epoll:4.1.77.Final

|    |    |    |    +--- io.netty:netty-transport-native-unix-common:4.1.77.Final

|    |    |    |    +--- io.netty:netty-transport-classes-kqueue:4.1.77.Final

|    |    |    |    \--- io.netty:netty-resolver-dns-classes-macos:4.1.77.Final

|    |    |    \--- org.apache.commons:commons-lang3:3.11

|    |    +--- org.apache.tinkerpop:gremlin-groovy:3.5.3

|    |    |    +--- org.apache.tinkerpop:gremlin-core:3.5.3 -> 3.6.1 (*)

|    |    |    +--- org.apache.ivy:ivy:2.4.0

|    |    |    +--- org.codehaus.groovy:groovy:2.5.14

|    |    |    +--- org.codehaus.groovy:groovy-groovysh:2.5.14

|    |    |    |    +--- org.codehaus.groovy:groovy-cli-picocli:2.5.14

|    |    |    |    |    \--- info.picocli:picocli:4.3.2

|    |    |    |    +--- org.codehaus.groovy:groovy-console:2.5.14

|    |    |    |    |    +--- org.codehaus.groovy:groovy-templates:2.5.14

|    |    |    |    |    |    \--- org.codehaus.groovy:groovy-xml:2.5.14

|    |    |    |    |    +--- org.codehaus.groovy:groovy-cli-picocli:2.5.14 (*)

|    |    |    |    |    \--- org.codehaus.groovy:groovy-swing:2.5.14

|    |    |    |    \--- jline:jline:2.14.6

|    |    |    +--- org.codehaus.groovy:groovy-json:2.5.14

|    |    |    +--- org.codehaus.groovy:groovy-jsr223:2.5.14

|    |    |    +--- org.apache.commons:commons-lang3:3.11

|    |    |    +--- org.mindrot:jbcrypt:0.4

|    |    |    \--- com.github.ben-manes.caffeine:caffeine:2.3.1

|    |    +--- com.google.guava:guava:29.0-jre

|    |    |    +--- com.google.guava:failureaccess:1.0.1

|    |    |    +--- com.google.guava:listenablefuture:9999.0-empty-to-avoid-conflict-with-guava

|    |    |    +--- com.google.code.findbugs:jsr305:3.0.2

|    |    |    +--- org.checkerframework:checker-qual:2.11.1

|    |    |    +--- com.google.errorprone:error_prone_annotations:2.3.4

|    |    |    \--- com.google.j2objc:j2objc-annotations:1.3

|    |    +--- org.noggit:noggit:0.8

|    |    +--- org.locationtech.spatial4j:spatial4j:0.8

|    |    +--- org.locationtech.jts:jts-core:1.17.0

|    |    +--- org.apache.commons:commons-text:1.9 (*)

|    |    \--- org.slf4j:slf4j-api:1.7.30

|    +--- org.apache.tinkerpop:tinkergraph-gremlin:3.5.3 -> 3.6.1

|    |    +--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)

|    |    \--- org.apache.commons:commons-lang3:3.11

|    +--- org.glassfish:javax.json:1.1.4

|    +--- io.dropwizard.metrics:metrics-core:4.1.18

|    |    \--- org.slf4j:slf4j-api:1.7.30

|    +--- io.dropwizard.metrics:metrics-graphite:4.1.18

|    |    +--- io.dropwizard.metrics:metrics-core:4.1.18 (*)

|    |    +--- com.rabbitmq:amqp-client:5.11.0

|    |    \--- org.slf4j:slf4j-api:1.7.30

|    +--- io.dropwizard.metrics:metrics-jmx:4.1.18

|    |    +--- io.dropwizard.metrics:metrics-core:4.1.18 (*)

|    |    \--- org.slf4j:slf4j-api:1.7.30

|    +--- net.oneandone.reflections8:reflections8:0.11.7

|    |    \--- org.javassist:javassist:3.22.0-GA

|    +--- commons-collections:commons-collections:3.2.2

|    +--- commons-configuration:commons-configuration:1.10

|    |    +--- commons-lang:commons-lang:2.6

|    |    \--- commons-logging:commons-logging:1.1.1 -> 1.2

|    +--- org.apache.commons:commons-configuration2:2.7 (*)

|    +--- commons-io:commons-io:2.8.0

|    +--- commons-codec:commons-codec:1.15

|    +--- com.carrotsearch:hppc:0.8.2

|    +--- com.boundary:high-scale-lib:1.0.6

|    +--- com.google.code.findbugs:jsr305:3.0.2

|    \--- org.slf4j:slf4j-api:1.7.30

+--- com.sleepycat:je:18.3.12

+--- org.apache.lucene:lucene-core:7.7.2

+--- org.apache.lucene:lucene-analyzers-common:7.7.2

|    \--- org.apache.lucene:lucene-core:7.7.2

+--- org.apache.lucene:lucene-queryparser:7.7.2

|    +--- org.apache.lucene:lucene-core:7.7.2

|    +--- org.apache.lucene:lucene-queries:7.7.2

|    \--- org.apache.lucene:lucene-sandbox:7.7.2

+--- org.apache.lucene:lucene-spatial:7.7.2

|    \--- org.apache.lucene:lucene-core:7.7.2

+--- org.apache.lucene:lucene-spatial-extras:7.7.2

|    +--- org.apache.lucene:lucene-core:7.7.2

|    +--- org.apache.lucene:lucene-spatial3d:7.7.2

|    +--- io.sgr:s2-geometry-library-java:1.0.0

|    \--- org.locationtech.spatial4j:spatial4j:0.7 -> 0.8

+--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)

+--- org.apache.tinkerpop:gremlin-driver:3.6.1 (*)

\--- org.apache.tinkerpop:tinkergraph-gremlin:3.6.1 (*)


compileOnly - Compile only dependencies for source set 'main'. (n)

No dependencies


default - Configuration for default artifacts. (n)

No dependencies


implementation - Implementation only dependencies for source set 'main'. (n)

+--- org.janusgraph:janusgraph-core:0.6.2 (n)

+--- unspecified (n)

+--- com.sleepycat:je:18.3.12 (n)

+--- org.apache.lucene:lucene-core:7.7.2 (n)

+--- org.apache.lucene:lucene-analyzers-common:7.7.2 (n)

+--- org.apache.lucene:lucene-queryparser:7.7.2 (n)

+--- org.apache.lucene:lucene-spatial:7.7.2 (n)

+--- org.apache.lucene:lucene-spatial-extras:7.7.2 (n)

+--- org.apache.tinkerpop:gremlin-core:3.6.1 (n)

+--- org.apache.tinkerpop:gremlin-driver:3.6.1 (n)

\--- org.apache.tinkerpop:tinkergraph-gremlin:3.6.1 (n)


mainSourceElements - List of source directories contained in the Main SourceSet. (n)

No dependencies


runtimeClasspath - Runtime classpath of source set 'main'.

+--- org.janusgraph:janusgraph-core:0.6.2

|    +--- org.janusgraph:janusgraph-driver:0.6.2

|    |    +--- org.apache.tinkerpop:gremlin-core:3.5.3 -> 3.6.1

|    |    |    +--- org.apache.tinkerpop:gremlin-shaded:3.6.1

|    |    |    +--- org.apache.tinkerpop:gremlin-language:3.6.1

|    |    |    |    +--- org.antlr:antlr4-runtime:4.9.1

|    |    |    |    +--- org.javatuples:javatuples:1.2

|    |    |    |    \--- org.apache.commons:commons-text:1.9

|    |    |    |         \--- org.apache.commons:commons-lang3:3.11

|    |    |    +--- org.apache.commons:commons-configuration2:2.7

|    |    |    |    +--- org.apache.commons:commons-lang3:3.9 -> 3.11

|    |    |    |    +--- org.apache.commons:commons-text:1.8 -> 1.9 (*)

|    |    |    |    \--- commons-logging:commons-logging:1.2

|    |    |    +--- commons-beanutils:commons-beanutils:1.9.4

|    |    |    |    +--- commons-logging:commons-logging:1.2

|    |    |    |    \--- commons-collections:commons-collections:3.2.2

|    |    |    +--- commons-collections:commons-collections:3.2.2

|    |    |    +--- org.apache.commons:commons-lang3:3.11

|    |    |    +--- org.yaml:snakeyaml:1.27

|    |    |    +--- com.carrotsearch:hppc:0.7.1 -> 0.8.2

|    |    |    +--- com.jcabi:jcabi-manifests:1.2.1

|    |    |    |    \--- com.jcabi:jcabi-log:0.20.0

|    |    |    |         \--- org.mockito:mockito-core:3.4.6

|    |    |    |              +--- net.bytebuddy:byte-buddy:1.10.13

|    |    |    |              +--- net.bytebuddy:byte-buddy-agent:1.10.13

|    |    |    |              \--- org.objenesis:objenesis:2.6

|    |    |    +--- net.objecthunter:exp4j:0.4.8

|    |    |    +--- org.slf4j:slf4j-api:1.7.25 -> 1.7.30

|    |    |    \--- org.slf4j:jcl-over-slf4j:1.7.25

|    |    |         \--- org.slf4j:slf4j-api:1.7.25 -> 1.7.30

|    |    +--- org.apache.tinkerpop:gremlin-driver:3.5.3 -> 3.6.1

|    |    |    +--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)

|    |    |    +--- io.netty:netty-all:4.1.77.Final

|    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final

|    |    |    |    |    \--- io.netty:netty-common:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)

|    |    |    |    |    \--- io.netty:netty-transport:4.1.77.Final

|    |    |    |    |         +--- io.netty:netty-common:4.1.77.Final

|    |    |    |    |         +--- io.netty:netty-buffer:4.1.77.Final (*)

|    |    |    |    |         \--- io.netty:netty-resolver:4.1.77.Final

|    |    |    |    |              \--- io.netty:netty-common:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-dns:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)

|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)

|    |    |    |    |    \--- io.netty:netty-codec:4.1.77.Final (*)

|    |    |    |    +--- io.netty:netty-codec-haproxy:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-http:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-http2:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-memcache:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-mqtt:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-redis:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-smtp:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-socks:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-stomp:4.1.77.Final

|    |    |    |    +--- io.netty:netty-codec-xml:4.1.77.Final

|    |    |    |    +--- io.netty:netty-common:4.1.77.Final

|    |    |    |    +--- io.netty:netty-handler:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-resolver:4.1.77.Final (*)

|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)

|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)

|    |    |    |    |    \--- io.netty:netty-codec:4.1.77.Final (*)

|    |    |    |    +--- io.netty:netty-handler-proxy:4.1.77.Final

|    |    |    |    +--- io.netty:netty-resolver:4.1.77.Final (*)

|    |    |    |    +--- io.netty:netty-resolver-dns:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)

|    |    |    |    |    +--- io.netty:netty-resolver:4.1.77.Final (*)

|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)

|    |    |    |    |    +--- io.netty:netty-codec:4.1.77.Final (*)

|    |    |    |    |    +--- io.netty:netty-codec-dns:4.1.77.Final (*)

|    |    |    |    |    \--- io.netty:netty-handler:4.1.77.Final (*)

|    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)

|    |    |    |    +--- io.netty:netty-transport-rxtx:4.1.77.Final

|    |    |    |    +--- io.netty:netty-transport-sctp:4.1.77.Final

|    |    |    |    +--- io.netty:netty-transport-udt:4.1.77.Final

|    |    |    |    +--- io.netty:netty-transport-classes-epoll:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)

|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)

|    |    |    |    |    \--- io.netty:netty-transport-native-unix-common:4.1.77.Final

|    |    |    |    |         +--- io.netty:netty-common:4.1.77.Final

|    |    |    |    |         +--- io.netty:netty-buffer:4.1.77.Final (*)

|    |    |    |    |         \--- io.netty:netty-transport:4.1.77.Final (*)

|    |    |    |    +--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)

|    |    |    |    +--- io.netty:netty-transport-classes-kqueue:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)

|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)

|    |    |    |    |    \--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)

|    |    |    |    +--- io.netty:netty-resolver-dns-classes-macos:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-resolver-dns:4.1.77.Final (*)

|    |    |    |    |    \--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)

|    |    |    |    +--- io.netty:netty-transport-native-epoll:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)

|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)

|    |    |    |    |    +--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)

|    |    |    |    |    \--- io.netty:netty-transport-classes-epoll:4.1.77.Final (*)

|    |    |    |    +--- io.netty:netty-transport-native-kqueue:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-common:4.1.77.Final

|    |    |    |    |    +--- io.netty:netty-buffer:4.1.77.Final (*)

|    |    |    |    |    +--- io.netty:netty-transport:4.1.77.Final (*)

|    |    |    |    |    +--- io.netty:netty-transport-native-unix-common:4.1.77.Final (*)

|    |    |    |    |    \--- io.netty:netty-transport-classes-kqueue:4.1.77.Final (*)

|    |    |    |    \--- io.netty:netty-resolver-dns-native-macos:4.1.77.Final

|    |    |    |         \--- io.netty:netty-resolver-dns-classes-macos:4.1.77.Final (*)

|    |    |    \--- org.apache.commons:commons-lang3:3.11

|    |    +--- org.apache.tinkerpop:gremlin-groovy:3.5.3

|    |    |    +--- org.apache.tinkerpop:gremlin-core:3.5.3 -> 3.6.1 (*)

|    |    |    +--- org.apache.ivy:ivy:2.4.0

|    |    |    +--- org.codehaus.groovy:groovy:2.5.14

|    |    |    +--- org.codehaus.groovy:groovy-groovysh:2.5.14

|    |    |    |    +--- org.codehaus.groovy:groovy-cli-picocli:2.5.14

|    |    |    |    |    \--- info.picocli:picocli:4.3.2

|    |    |    |    +--- org.codehaus.groovy:groovy-console:2.5.14

|    |    |    |    |    +--- org.codehaus.groovy:groovy-templates:2.5.14

|    |    |    |    |    |    \--- org.codehaus.groovy:groovy-xml:2.5.14

|    |    |    |    |    +--- org.codehaus.groovy:groovy-cli-picocli:2.5.14 (*)

|    |    |    |    |    \--- org.codehaus.groovy:groovy-swing:2.5.14

|    |    |    |    \--- jline:jline:2.14.6

|    |    |    +--- org.codehaus.groovy:groovy-json:2.5.14

|    |    |    +--- org.codehaus.groovy:groovy-jsr223:2.5.14

|    |    |    +--- org.apache.commons:commons-lang3:3.11

|    |    |    +--- org.mindrot:jbcrypt:0.4

|    |    |    \--- com.github.ben-manes.caffeine:caffeine:2.3.1

|    |    +--- com.google.guava:guava:29.0-jre

|    |    |    +--- com.google.guava:failureaccess:1.0.1

|    |    |    +--- com.google.guava:listenablefuture:9999.0-empty-to-avoid-conflict-with-guava

|    |    |    +--- com.google.code.findbugs:jsr305:3.0.2

|    |    |    +--- org.checkerframework:checker-qual:2.11.1

|    |    |    +--- com.google.errorprone:error_prone_annotations:2.3.4

|    |    |    \--- com.google.j2objc:j2objc-annotations:1.3

|    |    +--- org.noggit:noggit:0.8

|    |    +--- org.locationtech.spatial4j:spatial4j:0.8

|    |    +--- org.locationtech.jts:jts-core:1.17.0

|    |    +--- org.apache.commons:commons-text:1.9 (*)

|    |    \--- org.slf4j:slf4j-api:1.7.30

|    +--- org.apache.tinkerpop:tinkergraph-gremlin:3.5.3 -> 3.6.1

|    |    +--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)

|    |    \--- org.apache.commons:commons-lang3:3.11

|    +--- org.glassfish:javax.json:1.1.4

|    +--- io.dropwizard.metrics:metrics-core:4.1.18

|    |    \--- org.slf4j:slf4j-api:1.7.30

|    +--- io.dropwizard.metrics:metrics-graphite:4.1.18

|    |    +--- io.dropwizard.metrics:metrics-core:4.1.18 (*)

|    |    +--- com.rabbitmq:amqp-client:5.11.0

|    |    \--- org.slf4j:slf4j-api:1.7.30

|    +--- io.dropwizard.metrics:metrics-jmx:4.1.18

|    |    +--- io.dropwizard.metrics:metrics-core:4.1.18 (*)

|    |    \--- org.slf4j:slf4j-api:1.7.30

|    +--- net.oneandone.reflections8:reflections8:0.11.7

|    |    \--- org.javassist:javassist:3.22.0-GA

|    +--- commons-collections:commons-collections:3.2.2

|    +--- commons-configuration:commons-configuration:1.10

|    |    +--- commons-lang:commons-lang:2.6

|    |    \--- commons-logging:commons-logging:1.1.1 -> 1.2

|    +--- org.apache.commons:commons-configuration2:2.7 (*)

|    +--- commons-io:commons-io:2.8.0

|    +--- commons-codec:commons-codec:1.15

|    +--- com.carrotsearch:hppc:0.8.2

|    +--- com.boundary:high-scale-lib:1.0.6

|    +--- com.google.code.findbugs:jsr305:3.0.2

|    \--- org.slf4j:slf4j-api:1.7.30

+--- com.sleepycat:je:18.3.12

+--- org.apache.lucene:lucene-core:7.7.2

+--- org.apache.lucene:lucene-analyzers-common:7.7.2

|    \--- org.apache.lucene:lucene-core:7.7.2

+--- org.apache.lucene:lucene-queryparser:7.7.2

|    +--- org.apache.lucene:lucene-core:7.7.2

|    +--- org.apache.lucene:lucene-queries:7.7.2

|    \--- org.apache.lucene:lucene-sandbox:7.7.2

+--- org.apache.lucene:lucene-spatial:7.7.2

|    \--- org.apache.lucene:lucene-core:7.7.2

+--- org.apache.lucene:lucene-spatial-extras:7.7.2

|    +--- org.apache.lucene:lucene-core:7.7.2

|    +--- org.apache.lucene:lucene-spatial3d:7.7.2

|    +--- io.sgr:s2-geometry-library-java:1.0.0

|    \--- org.locationtech.spatial4j:spatial4j:0.7 -> 0.8

+--- org.apache.tinkerpop:gremlin-core:3.6.1 (*)

+--- org.apache.tinkerpop:gremlin-driver:3.6.1 (*)

\--- org.apache.tinkerpop:tinkergraph-gremlin:3.6.1 (*)


runtimeElements - Elements of runtime for main. (n)

No dependencies


runtimeOnly - Runtime only dependencies for source set 'main'. (n)

No dependencies


Thanks


On Monday, August 22, 2022 8:24 AM, hadoopmarc@... wrote:

Probably, janusgraph and tinkerpop versions got mixed up. If you use maven, can you show the janusgraph dependencies you used in the pom.xml (and tinkerpop if present in the pom.xml).

Best wishes,    Marc



Re: berkeleyje and lucene NoSuchMethodError

hadoopmarc@...
 

Probably, janusgraph and tinkerpop versions got mixed up. If you use maven, can you show the janusgraph dependencies you used in the pom.xml (and tinkerpop if present in the pom.xml).

Best wishes,    Marc


berkeleyje and lucene NoSuchMethodError

queshaw
 

Hi,


I hope this is an appropriate question. This is my first attempt to use janusgraph. I got extra dependencies from the 0.6.2 source, without lucene and berkeleyce were not found. I'm using jdk 1.8.2 for both building and running a test program. I get this error:


java.lang.NoSuchMethodError: org.apache.tinkerpop.gremlin.structure.util.CloseableIterator.asCloseable(Ljava/util/Iterator;)Lorg/apache/tinkerpop/gremlin/structure/util/CloseableIterator;

at org.janusgraph.graphdb.util.CloseableIteratorUtils.<clinit>(CloseableIteratorUtils.java:28)

at org.janusgraph.graphdb.query.graph.GraphCentricQueryBuilder.lambda$iterables$1(GraphCentricQueryBuilder.java:240)

at com.google.common.collect.Iterables.isEmpty(Iterables.java:988)

at org.janusgraph.graphdb.transaction.StandardJanusGraphTx.addProperty(StandardJanusGraphTx.java:915)

at org.janusgraph.graphdb.transaction.StandardJanusGraphTx.addProperty(StandardJanusGraphTx.java:838)

at org.janusgraph.graphdb.transaction.StandardJanusGraphTx.addProperty(StandardJanusGraphTx.java:834)

at org.janusgraph.graphdb.transaction.StandardJanusGraphTx.makeSchemaVertex(StandardJanusGraphTx.java:970)

at org.janusgraph.graphdb.transaction.StandardJanusGraphTx.makePropertyKey(StandardJanusGraphTx.java:989)

at org.janusgraph.graphdb.types.StandardPropertyKeyMaker.make(StandardPropertyKeyMaker.java:114)

at lnf.LoadGraph.load(LoadGraph.java:81)

at lnf.LoadGraph.go(LoadGraph.java:58)

at lnf.LoadGraph.main(LoadGraph.java:44)


The line in question is:


PropertyKey url = mgmt.makePropertyKey("url").dataType(String.class).make();


Do you have any idea what the problem could be?



Re: Janusgraph-full-0.6.1: how to fix "WARNING: Critical severity vulnerabilities were found with Log4j!"

hadoopmarc@...
 
Edited

Hi Yingjie,

The JanusGraph and TinkerPop code only explicitly depend on slfj4j, so you can choose the logging implementation. you want You can simply remove the log4j-1.2.17.jar from the lib folder of the janusgraph binary distribution or exclude it in the pom.xml of any project depending on janusgraph.
Note that janusgraph also ships with logback and provides a sample config in conf/logback.xml.

Best wishes,   Marc


Janusgraph-full-0.6.1: how to fix "WARNING: Critical severity vulnerabilities were found with Log4j!"

Yingjie Li
 

Hello All, 

I have run janusgraph all in one 0.6.1 (janusgraph-full-0.6.1) and have embeded cassandra  and elastic search. It seems that the embeded log4j has security issues and the recomended fixes as as below. Any people have done this for their installation, what are the recommended fix ?

Thanks
Yingjie

1.      Upgrade the affected product listed below to a version which includes a patched version of log4j – CISO requires all version 1.x and 2.x to be upgraded to version 2.17.1 or later. 
2.      If upgrade is not possible, the affected component must be uninstalled or deleted.


Re: 0.5.3 Upsert and RemoveRelation Issues

Boxuan Li
 

Thanks Sammy. Regarding your last question, I believe it’s a design choice to let user know something wrong happened.

On Aug 7, 2022, at 2:11 AM, sammy.jia via lists.lfaidata.foundation <sammy.jia=gmail.com@...> wrote:

I tried to create a snippet but was unable to reproduce the error. I will have to consult with some people over the weekday. Apologies, creating the snippet may take a bit of time.

In the meantime, do you happen to know the answer to the last question? Is it simply a design choice, or would JanusGraph stop working properly if it exited the method without generating an exception?


Re: 0.5.3 Upsert and RemoveRelation Issues

sammy.jia@...
 

I tried to create a snippet but was unable to reproduce the error. I will have to consult with some people over the weekday. Apologies, creating the snippet may take a bit of time.

In the meantime, do you happen to know the answer to the last question? Is it simply a design choice, or would JanusGraph stop working properly if it exited the method without generating an exception?


Re: 0.5.3 Upsert and RemoveRelation Issues

Boxuan Li
 

Hi,

Thanks for reporting and investigating! To help us understand more about the context, would you mind sharing an isolated code snippet that is runnable and can reproduce the error? I was trying to reproduce issue but failed to do so.

Thanks,
Boxuan

On Aug 6, 2022, at 1:49 AM, sammy.jia via lists.lfaidata.foundation <sammy.jia=gmail.com@...> wrote:

Hello, 

I am using Java and JanusGraph 0.5.3, but I am having issues with a specific snippet of code. The code upserts a vertex and then adds a Cardinality.single property to the upserted vertex, even if the vertex already has the correct property value. The code snippet is provided at the bottom of this message.

The code works fine for inserted vertices, but it generates an IllegalArgumentException for updated vertices. The exception is being generated by StandardJanusGraphTx.java's removeRelation method. After some debugging, I discovered that the exact same property step is being called twice for updated vertices. The first property method call uses removeRelation to delete the old property from the updated vertex. The second property method call then uses removeRelation to delete the exact same old property as the first method call (they share the same ID). Strangely, the old property still thinks it is in the 'loaded' state. Midway through removeRelation, the server realizes that that the property has already been deleted, updates the property's lifecycle to 'removed' at roughly StandardJanusGraphTx.java:595, and throws an exception at StandardJanusGraphTx.java:602.

P.S. In this specific case, I was replacing a property with the exact same value. Eg. the updated vertex already has a property called "prop3" with the value "value3", but I am calling property("prop3", "value3") anyways without checking the vertex's state.

I have three main questions:
1. Why is the property step being called twice?
2. Does JanusGraph allow you to update a Cardinality.single property twice? 
3. Why does removeRelation generate a generic IllegalArgumentException when we delete something that has already been deleted? Shouldn't it just output a log and exit the method?

---

GraphTraversal<Vertex, Vertex> graphTraversal = null;

for (….) {

    if (graphTraversal == null) {

        graphTraversal = graphTraversalSource.V().has("prop1", "value1").fold()

            .coalesce(__.unfold(),

                 __.addV("label")

                .property("prop1", "value1")

                .property("prop2", "value2"));

 

    } else {

        graphTraversal.V().hasLabel("label").has("prop1", "value1").fold()

            .coalesce(__.unfold(),

                __.addV("label")

                .property("prop1", "value1")

                .property("prop2", "value2"));

    }

    graphTraversal.property("prop3", "value3");  // this is somehow being called twice

}



0.5.3 Upsert and RemoveRelation Issues

sammy.jia@...
 

Hello, 

I am using Java and JanusGraph 0.5.3, but I am having issues with a specific snippet of code. The code upserts a vertex and then adds a Cardinality.single property to the upserted vertex, even if the vertex already has the correct property value. The code snippet is provided at the bottom of this message.

The code works fine for inserted vertices, but it generates an IllegalArgumentException for updated vertices. The exception is being generated by StandardJanusGraphTx.java's removeRelation method. After some debugging, I discovered that the exact same property step is being called twice for updated vertices. The first property method call uses removeRelation to delete the old property from the updated vertex. The second property method call then uses removeRelation to delete the exact same old property as the first method call (they share the same ID). Strangely, the old property still thinks it is in the 'loaded' state. Midway through removeRelation, the server realizes that that the property has already been deleted, updates the property's lifecycle to 'removed' at roughly StandardJanusGraphTx.java:595, and throws an exception at StandardJanusGraphTx.java:602.

P.S. In this specific case, I was replacing a property with the exact same value. Eg. the updated vertex already has a property called "prop3" with the value "value3", but I am calling property("prop3", "value3") anyways without checking the vertex's state.

I have three main questions:
1. Why is the property step being called twice?
2. Does JanusGraph allow you to update a Cardinality.single property twice? 
3. Why does removeRelation generate a generic IllegalArgumentException when we delete something that has already been deleted? Shouldn't it just output a log and exit the method?

---

GraphTraversal<Vertex, Vertex> graphTraversal = null;

for (….) {

    if (graphTraversal == null) {

        graphTraversal = graphTraversalSource.V().has("prop1", "value1").fold()

            .coalesce(__.unfold(),

                 __.addV("label")

                .property("prop1", "value1")

                .property("prop2", "value2"));

 

    } else {

        graphTraversal.V().hasLabel("label").has("prop1", "value1").fold()

            .coalesce(__.unfold(),

                __.addV("label")

                .property("prop1", "value1")

                .property("prop2", "value2"));

    }

    graphTraversal.property("prop3", "value3");  // this is somehow being called twice

}


Re: Incorrect result when lucene index is present

hadoopmarc@...
 
Edited

OK, I repeated the experiment and got "0 1" again, so I expand on what I did.

I use the janusgraph-0.6.2 full binary distribution and start cassandra and elasticsearch with:

$ bin/janusgraph.sh start

I leave the running Janusgraph Server unused and start a JanusGraph instance in the gremlin console with:
graph = JanusGraphFactory.open('conf/janusgraph-cql-es.properties')

Note that your code lines show a private properties file.

Best wishes,   Marc


Re: Incorrect result when lucene index is present

inverseintegral42@...
 

Hey Marc,

I actually just tested your example where p and q are of type Integer with cql and elasticsearch:

PropertiesConfiguration conf = ConfigurationUtil.loadPropertiesConfig("conf/test.properties");
graph = JanusGraphFactory.open(conf);

GraphTraversalSource g = graph.traversal();
JanusGraphManagement m = graph.openManagement();

VertexLabel l = m.makeVertexLabel("L").make();
PropertyKey p = m.makePropertyKey("p").dataType(Integer.class).make();
PropertyKey q = m.makePropertyKey("q").dataType(Integer.class).make();
m.buildIndex("someName", Vertex.class).addKey(p).addKey(q).indexOnly(l).buildMixedIndex("jgex");
m.commit();

g.addV("L").property("p", 1).next();
g.tx().commit();

System.out.println(g.V().hasLabel("L").has("q").count().next());
System.out.println(g.V().hasLabel("L").has("q", not(eq(2))).count().next());
But I get the output 0, 0 which is what I would expect. You wrote that you got the output 0, 1 though. Do you have any idea where this could come from?


Re: Incorrect result when lucene index is present

inverseintegral42@...
 

Dear Marc,

I will report the issue on GitHub in that case. Currently, I'm busy with a project that automatically identifies these bugs but in the near future I can definitely start submitting PRs for the issues that I found.

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