janusgraph-users@lists.lfaidata.foundation | Error during serialization: Cannot get namespace of root

rameshn...@...

Hi All,

I am totally new to Graph Databases.

I am using node js package gremlin-javascript with Janusgraph Project.

When I execute the node pgm, I get the following error:

I am not sure what is wrong:

Error during serialization: Cannot get namespace of root (through reference chain: java.util.ArrayList[0]->org.janusgraph.graphdb.database.StandardJanusGraph["backend"]->org.janusgraph.diskstorage.Backend["storeManager"]->org.janusgraph.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter["features"]->org.janusgraph.diskstorage.keycolumnvalue.StandardStoreFeatures["keyConsistentTxConfig"]->org.janusgraph.diskstorage.configuration.ModifiableConfiguration["rootNamespace"]->org.janusgraph.diskstorage.configuration.ConfigNamespace["namespace"]) (Error 599)

Thanks

Ramesh N

Jason Plurad <plu...@...>

#409

Hi Ramesh, what Gremlin query are you passing to the server?

-- Jason

Show quoted text

On Thursday, July 6, 2017 at 11:04:08 AM UTC-4, Ramesh Nagaraju wrote:

Hi All,

I am totally new to Graph Databases.
I am using node js package gremlin-javascript with Janusgraph Project.
When I execute the node pgm, I get the following error:

I am not sure what is wrong:

Error during serialization: Cannot get namespace of root (through reference chain: java.util.ArrayList[0]->org.janusgraph.graphdb.database.StandardJanusGraph["backend"]->org.janusgraph.diskstorage.Backend["storeManager"]->org.janusgraph.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter["features"]->org.janusgraph.diskstorage.keycolumnvalue.StandardStoreFeatures["keyConsistentTxConfig"]->org.janusgraph.diskstorage.configuration.ModifiableConfiguration["rootNamespace"]->org.janusgraph.diskstorage.configuration.ConfigNamespace["namespace"]) (Error 599)

Thanks
Ramesh N

David Pitera <piter...@...>

#427

Hey Ramesh,

I have seen this issue before but only when the query you issue is actually returning a Graph reference itself; and I've only seen it in the context of an Http query. This leads me to believe there is an issue with the way the Http serializer serializes a graph reference.

It should be a no-stopper for you, as everything else should work as expected, and if you really don't like seeing that message, you can modify your gremlin scripts from something like `graph` to `graph; 0;` or `graph.vertices().size()` (anything that doesn't actually return a graph reference).

If you feel so inspired, please open an issue in the repo. I have a feeling but not sure that the fix might be at the TinkerPop level.

Show quoted text

On Thursday, July 6, 2017 at 11:04:08 AM UTC-4, Ramesh Nagaraju wrote:

Hi All,

I am totally new to Graph Databases.
I am using node js package gremlin-javascript with Janusgraph Project.
When I execute the node pgm, I get the following error:

I am not sure what is wrong:

Error during serialization: Cannot get namespace of root (through reference chain: java.util.ArrayList[0]->org.janusgraph.graphdb.database.StandardJanusGraph["backend"]->org.janusgraph.diskstorage.Backend["storeManager"]->org.janusgraph.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter["features"]->org.janusgraph.diskstorage.keycolumnvalue.StandardStoreFeatures["keyConsistentTxConfig"]->org.janusgraph.diskstorage.configuration.ModifiableConfiguration["rootNamespace"]->org.janusgraph.diskstorage.configuration.ConfigNamespace["namespace"]) (Error 599)

Thanks
Ramesh N

mandarba...@...

#3761

I am getting the same error

When I am using python client.

gremlin_client = client.Client('ws://localhost:8182/gremlin', 'g')

gremlin_client.submit("JanusGraphFactory.open('/janusgraph-config/janus-berkleyje.properties')").next()

My gremlin yaml

host: 0.0.0.0
port: 8182
scriptEvaluationTimeout: 30000
channelizer: org.janusgraph.channelizers.JanusGraphWsAndHttpChannelizer
#org.apache.tinkerpop.gremlin.server.channel.WsAndHttpChannelizer
#org.apache.tinkerpop.gremlin.server.channel.HttpChannelizer
graphManager: org.janusgraph.graphdb.management.JanusGraphManager

graphs: {
#  graph: /janusgraph-config/janusgraph.properties,
  graph: /janusgraph-config/janus-berkleyje.properties,
  ConfigurationManagementGraph:  /janusgraph-config/JanusGraph-configurationmanagement.properties
  }
scriptEngines: {
  gremlin-python: {},
  gremlin-groovy: {
    plugins: { org.janusgraph.graphdb.tinkerpop.plugin.JanusGraphGremlinPlugin: {},
               org.apache.tinkerpop.gremlin.server.jsr223.GremlinServerGremlinPlugin: {},
               org.apache.tinkerpop.gremlin.tinkergraph.jsr223.TinkerGraphGremlinPlugin: {},
               org.apache.tinkerpop.gremlin.jsr223.ImportGremlinPlugin: {classImports: [java.lang.Math], methodImports: [java.lang.Math#*]},
               org.apache.tinkerpop.gremlin.jsr223.ScriptFileGremlinPlugin: {files: [scripts/empty-sample.groovy]}}}}
serializers:
  - { className: org.apache.tinkerpop.gremlin.driver.ser.GryoMessageSerializerV3d0, config: { ioRegistries: [org.janusgraph.graphdb.tinkerpop.JanusGraphIoRegistry] }}
  - { className: org.apache.tinkerpop.gremlin.driver.ser.GryoMessageSerializerV3d0, config: { serializeResultToString: true }}
  - { className: org.apache.tinkerpop.gremlin.driver.ser.GraphSONMessageSerializerV3d0, config: { ioRegistries: [org.janusgraph.graphdb.tinkerpop.JanusGraphIoRegistry] }}
  - { className: org.apache.tinkerpop.gremlin.driver.ser.GraphSONMessageSerializerV2d0, config: { ioRegistries: [org.janusgraph.graphdb.tinkerpop.JanusGraphIoRegistry] }}
  # Older serialization versions for backwards compatibility:
  - { className: org.apache.tinkerpop.gremlin.driver.ser.GryoMessageSerializerV1d0, config: { ioRegistries: [org.janusgraph.graphdb.tinkerpop.JanusGraphIoRegistry] }}
  - { className: org.apache.tinkerpop.gremlin.driver.ser.GryoLiteMessageSerializerV1d0, config: {ioRegistries: [org.janusgraph.graphdb.tinkerpop.JanusGraphIoRegistry] }}
  - { className: org.apache.tinkerpop.gremlin.driver.ser.GryoMessageSerializerV1d0, config: { serializeResultToString: true }}
  - { className: org.apache.tinkerpop.gremlin.driver.ser.GraphSONMessageSerializerGremlinV2d0, config: { ioRegistries: [org.janusgraph.graphdb.tinkerpop.JanusGraphIoRegistry] }}
  - { className: org.apache.tinkerpop.gremlin.driver.ser.GraphSONMessageSerializerGremlinV1d0, config: { ioRegistries: [org.janusgraph.graphdb.tinkerpop.JanusGraphIoRegistryV1d0] }}
  - { className: org.apache.tinkerpop.gremlin.driver.ser.GraphSONMessageSerializerV1d0, config: { ioRegistries: [org.janusgraph.graphdb.tinkerpop.JanusGraphIoRegistryV1d0] }}
processors:
  - { className: org.apache.tinkerpop.gremlin.server.op.session.SessionOpProcessor, config: { sessionTimeout: 28800000 }}
  - { className: org.apache.tinkerpop.gremlin.server.op.traversal.TraversalOpProcessor, config: { cacheExpirationTime: 600000, cacheMaxSize: 1000 }}
metrics: {
  consoleReporter: {enabled: true, interval: 180000},
  csvReporter: {enabled: true, interval: 180000, fileName: /tmp/gremlin-server-metrics.csv},
  jmxReporter: {enabled: true},
  slf4jReporter: {enabled: true, interval: 180000},
  gangliaReporter: {enabled: false, interval: 180000, addressingMode: MULTICAST},
  graphiteReporter: {enabled: false, interval: 180000}}
maxInitialLineLength: 4096
maxHeaderSize: 8192
maxChunkSize: 8192
maxContentLength: 65536
maxAccumulationBufferComponents: 1024
resultIterationBatchSize: 64
writeBufferLowWaterMark: 32768
writeBufferHighWaterMark: 65536

Show quoted text

On Tuesday, 11 July 2017 17:16:35 UTC+1, David Pitera wrote:

Hey Ramesh,

I have seen this issue before but only when the query you issue is actually returning a Graph reference itself; and I've only seen it in the context of an Http query. This leads me to believe there is an issue with the way the Http serializer serializes a graph reference.

It should be a no-stopper for you, as everything else should work as expected, and if you really don't like seeing that message, you can modify your gremlin scripts from something like `graph` to `graph; 0;` or `graph.vertices().size()` (anything that doesn't actually return a graph reference).

If you feel so inspired, please open an issue in the repo. I have a feeling but not sure that the fix might be at the TinkerPop level.

On Thursday, July 6, 2017 at 11:04:08 AM UTC-4, Ramesh Nagaraju wrote:
Hi All,

I am totally new to Graph Databases.
I am using node js package gremlin-javascript with Janusgraph Project.
When I execute the node pgm, I get the following error:

I am not sure what is wrong:

Error during serialization: Cannot get namespace of root (through reference chain: java.util.ArrayList[0]->org.janusgraph.graphdb.database.StandardJanusGraph["backend"]->org.janusgraph.diskstorage.Backend["storeManager"]->org.janusgraph.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter["features"]->org.janusgraph.diskstorage.keycolumnvalue.StandardStoreFeatures["keyConsistentTxConfig"]->org.janusgraph.diskstorage.configuration.ModifiableConfiguration["rootNamespace"]->org.janusgraph.diskstorage.configuration.ConfigNamespace["namespace"]) (Error 599)

Thanks
Ramesh N