Query requires iterating over all vertices


Laura Morales <lauretas@...>
 

I was able to create a "Composite Index", but I cannot seem to be able to create a "Mixed Index" with berkeleyjs and lucene.
What I've done:

- I've modified the ".properties" file
index.search.backend=lucene
index.search.directory=/data/searchindex
- I've created the index by following the instructions at https://docs.janusgraph.org/index-management/index-performance/#mixed-index I've tried with both one and two properties in the index

When I make the query, I always get the same warning "WARN org.janusgraph.graphdb.transaction.StandardJanusGraphTx - Query requires iterating over all vertices [()]. For better performance, use indexes"
I don't understand where the problem is. When I create the index following the documentation, everything seems to work fine, I don't get any errors.

How can I debug this?


Boxuan Li
 

Hi, it means your query is not leveraging your indexes. Can you provide the query and also the output of `mgmt.printIndexes()` (or how you created the indices)?

On Jul 22, 2021, at 11:03 PM, Laura Morales <lauretas@...> wrote:

I was able to create a "Composite Index", but I cannot seem to be able to create a "Mixed Index" with berkeleyjs and lucene.
What I've done:

- I've modified the ".properties" file
index.search.backend=lucene
index.search.directory=/data/searchindex
- I've created the index by following the instructions at https://docs.janusgraph.org/index-management/index-performance/#mixed-index I've tried with both one and two properties in the index

When I make the query, I always get the same warning "WARN org.janusgraph.graphdb.transaction.StandardJanusGraphTx - Query requires iterating over all vertices [()]. For better performance, use indexes"
I don't understand where the problem is. When I create the index following the documentation, everything seems to work fine, I don't get any errors.

How can I debug this?





Laura Morales <lauretas@...>
 

Hi, it means your query is not leveraging your indexes. Can you provide the query and also the output of `mgmt.printIndexes()` (or how you created the indices)?
My ".properties" file:
gremlin.graph=org.janusgraph.core.JanusGraphFactory
storage.backend=berkeleyje
storage.directory=/graph/db
index.search.backend=lucene
index.search.directory=/graph/index

Then I open the "gremlin.sh" console and start the graph like this:
graph = JanusGraphFactory.open("/graph/database.properties")
g = graph.traversal()

I've imported the data from https://raw.githubusercontent.com/krlawrence/graph/master/sample-data/air-routes.graphml like this:
graph.io(graphml()).readGraph("airroutes.graphml")
graph.tx().commit()

I've tried to create a Composite Index following the documentation at https://docs.janusgraph.org/index-management/index-performance/#composite-index and this works.

Then I've tried to create a Mixed Index following the documentation below of the above, but it doesn't work. I always get that same warning.
I've tried to create the index on the property "country", just by copy-pasting the example in the documentation and replacing the property name.

The query is (typed into the "gremlin.sh" console):
g.V().has("country").values("country").dedup().order().limit(10)

The output of "mgmt.printIndexes()" is:
------------------------------------------------------------------------------------------------
Vertex Index Name | Type | Unique | Backing | Key: Status |
---------------------------------------------------------------------------------------------------
ctryidx | Mixed | false | search | country: ENABLED |
---------------------------------------------------------------------------------------------------
Edge Index (VCI) Name | Type | Unique | Backing | Key: Status |
---------------------------------------------------------------------------------------------------
---------------------------------------------------------------------------------------------------
Relation Index | Type | Direction | Sort Key | Order | Status |
---------------------------------------------------------------------------------------------------


Boxuan Li
 

Try rewriting your query as:

`  g.V().has("country", P.neq(null)).values("country").dedup().order().limit(10)`

FYI starting from the upcoming 0.6.0 release, has("country") will leverage the mixed index. See https://github.com/JanusGraph/janusgraph/pull/2175 for more details.


Laura Morales <lauretas@...>
 

Try rewriting your query as:
`  g.V().has("country", P.neq(null)).values("country").dedup().order().limit(10)`
Unfortunately this does not seem to remove the warning.

WARN org.janusgraph.graphdb.transaction.StandardJanusGraphTx - Query requires iterating over all vertices [(country <> null)]. For better performance, use indexes

I only followed the instructions in the documentations, verbatim. I hope that's all there is to create the index.


Laura Morales <lauretas@...>
 

I was able to open my lucene folder with a tool called "luke" for peeking at the data, and all the "country" values seems to be in there. I assume by looking at this that the index was created and persisted. I really don't understand why Janus is not able to use it...

Sent: Thursday, July 22, 2021 at 5:52 PM
From: "Laura Morales" <lauretas@...>
To: janusgraph-users@...
Cc: janusgraph-users@...
Subject: Re: [janusgraph-users] Query requires iterating over all vertices

Try rewriting your query as:
`  g.V().has("country", P.neq(null)).values("country").dedup().order().limit(10)`
Unfortunately this does not seem to remove the warning.

WARN org.janusgraph.graphdb.transaction.StandardJanusGraphTx - Query requires iterating over all vertices [(country <> null)]. For better performance, use indexes

I only followed the instructions in the documentations, verbatim. I hope that's all there is to create the index.


Boxuan Li
 

Can you show the profile output? Just add .profile() to the end of your query.

「Laura Morales <lauretas@...>」在 2021年7月23日 週五,下午4:13 寫道:

I was able to open my lucene folder with a tool called "luke" for peeking at the data, and all the "country" values seems to be in there. I assume by looking at this that the index was created and persisted. I really don't understand why Janus is not able to use it...


> Sent: Thursday, July 22, 2021 at 5:52 PM
> From: "Laura Morales" <lauretas@...>
> To: janusgraph-users@...
> Cc: janusgraph-users@...
> Subject: Re: [janusgraph-users] Query requires iterating over all vertices
>
> > Try rewriting your query as:
> > `  g.V().has("country", P.neq(null)).values("country").dedup().order().limit(10)`
>
> Unfortunately this does not seem to remove the warning.
>
> WARN  org.janusgraph.graphdb.transaction.StandardJanusGraphTx  - Query requires iterating over all vertices [(country <> null)]. For better performance, use indexes
>
> I only followed the instructions in the documentations, verbatim. I hope that's all there is to create the index.






Laura Morales <lauretas@...>
 

Can you show the profile output? Just add .profile() to the end of your query.
$ ./bin/gremlin.sh
gremlin> graph = JanusGraphFactory.open("/graph/graph.properties")
gremlin> g = graph.traversal()
gremlin> g.V().has("country", P.neq(null)).values("country").dedup().order().limit(10).profile()
10:50:56 WARN org.janusgraph.graphdb.transaction.StandardJanusGraphTx - Query requires iterating over all vertices [(country <> null)]. For better performance, use indexes
==>Traversal Metrics
Step Count Traversers Time (ms) % Dur
=============================================================================================================
JanusGraphStep([],[country.neq]) 3374 3374 456.651 73.93
\_condition=(country <> null)
\_orders=[]
\_isFitted=false
\_isOrdered=true
\_query=[]
optimization 0.054
optimization 0.888
scan 0.000
\_query=[]
\_fullscan=true
\_condition=VERTEX
JanusGraphPropertiesStep([country],value) 3374 3374 149.024 24.13
\_condition=type[country]
\_orders=[]
\_isFitted=true
\_isOrdered=true
\_query=org.janusgraph.diskstorage.keycolumnvalue.SliceQuery@811cc87d
\_vertices=1
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optimization 0.004
optimization 0.004
optimization 0.008
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optimization 0.010
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optimization 0.025
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optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.009
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.008
optimization 0.004
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optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.006
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.008
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.005
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.007
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.178
optimization 0.028
optimization 0.007
optimization 0.005
optimization 0.005
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.013
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.004
optimization 0.005
optimization 0.004
optimization 0.004
optimization 0.005
optimization 0.004
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optimization 0.004
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optimization 0.006
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optimization 0.004
optimization 0.004
DedupGlobalStep 232 232 10.453 1.69
OrderGlobalStep 11 11 1.418 0.23
RangeGlobalStep(0,10) 10 10 0.140 0.02
>TOTAL - - 617.687 -


Laura Morales <lauretas@...>
 

I've tried with the graph of the gods (steps shown below), and the indexes seems to be persisted and working fine (don't see any warning when querying by name or age). So I guess I have some issue with the way I create the index on my database... but I really don't understand what it is. I've followed the documentation on how to create them.

My ".properties" file:
gremlin.graph=org.janusgraph.core.JanusGraphFactory
storage.backend=berkeleyje
storage.directory=/graph/db
index.search.backend=lucene
index.search.directory=/graph/index

$ ./bin/gremlin.sh
gremlin> graph = JanusGraphFactory.open("/graph/graph.properties")
gremlin> GraphOfTheGodsFactory.load(graph)
gremlin> mgmt = graph.openManagement()
gremlin> mgmt.printIndexes()
==>------------------------------------------------------------------------------------------------
Vertex Index Name | Type | Unique | Backing | Key: Status |
---------------------------------------------------------------------------------------------------
name | Composite | true | internalindex | name: ENABLED |
vertices | Mixed | false | search | age: ENABLED |
---------------------------------------------------------------------------------------------------
Edge Index (VCI) Name | Type | Unique | Backing | Key: Status |
---------------------------------------------------------------------------------------------------
edges | Mixed | false | search | reason: ENABLED |
| | | | place: ENABLED |
---------------------------------------------------------------------------------------------------
Relation Index | Type | Direction | Sort Key | Order | Status |
---------------------------------------------------------------------------------------------------
battlesByTime | battled | BOTH | time | desc | ENABLED |
---------------------------------------------------------------------------------------------------
 
 
 

Sent: Friday, July 23, 2021 at 10:43 AM
From: "Boxuan Li" <liboxuan@...>
To: janusgraph-users@...
Subject: Re: [janusgraph-users] Query requires iterating over all vertices

Can you show the profile output? Just add .profile() to the end of your query.


Boxuan Li
 

Looks like this is because you are indexing your property as text. See https://docs.janusgraph.org/index-backend/text-search/#full-text-search_1

I believe the query has(“country", P.neq(null)) would work when you build your index as follows:

addKey(country, Mapping.STRING.asParameter()).buildMixedIndex("search”)

or using Mapping.TEXTSTRING.

Moreover, if you try the unreleased version (on GitHub master branch), even your original query and setup should work.

Best,
Boxuan

On Jul 23, 2021, at 4:56 PM, Laura Morales <lauretas@...> wrote:

Can you show the profile output? Just add .profile() to the end of your query.

$ ./bin/gremlin.sh
gremlin> graph = JanusGraphFactory.open("/graph/graph.properties")
gremlin> g = graph.traversal()
gremlin> g.V().has("country", P.neq(null)).values("country").dedup().order().limit(10).profile()
10:50:56 WARN  org.janusgraph.graphdb.transaction.StandardJanusGraphTx  - Query requires iterating over all vertices [(country <> null)]. For better performance, use indexes
==>Traversal Metrics
Step                                                               Count  Traversers       Time (ms)    % Dur
=============================================================================================================
JanusGraphStep([],[country.neq])                                    3374        3374         456.651    73.93
   \_condition=(country <> null)
   \_orders=[]
   \_isFitted=false
   \_isOrdered=true
   \_query=[]
 optimization                                                                                 0.054
 optimization                                                                                 0.888
 scan                                                                                         0.000
   \_query=[]
   \_fullscan=true
   \_condition=VERTEX
JanusGraphPropertiesStep([country],value)                           3374        3374         149.024    24.13
   \_condition=type[country]
   \_orders=[]
   \_isFitted=true
   \_isOrdered=true
   \_query=org.janusgraph.diskstorage.keycolumnvalue.SliceQuery@811cc87d
   \_vertices=1
 optimization                                                                                 0.077
 optimization                                                                                 0.022
 optimization                                                                                 0.005
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 optimization                                                                                 0.003
 optimization                                                                                 0.003
 optimization                                                                                 0.003
 optimization                                                                                 8.391
 optimization                                                                                 0.038
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.003
 optimization                                                                                 0.004
 optimization                                                                                 0.003
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 optimization                                                                                 0.003
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 optimization                                                                                 0.007
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 optimization                                                                                 0.004
 optimization                                                                                 0.003
 optimization                                                                                 0.003
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 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.006
 optimization                                                                                 0.006
 optimization                                                                                 4.052
 optimization                                                                                 0.099
 optimization                                                                                 0.017
 optimization                                                                                 0.005
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.013
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.005
 optimization                                                                                 0.008
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.004
 optimization                                                                                 0.008
 optimization